| Protein: | SYDC2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 558 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYDC2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
456.0 | [0..1] | [558..1] |
|
Region A: Residues: [1-558] |
1 11 21 31 41 51
| | | | | |
1 MSSESEIPPL SSSTAAAEES GEKTSKKAAK KEAAKLEKLR RRQEQEEATR RTASISLEEN 60
61 DEFSNNYGDV TLTELQSSAD PKAGKWIEAV EGKEWTDVSD LVEEMLESEV LIRGRVHTNR 120
121 PTSNKLGFVV LRESGSTVQC VVSQSEKTKV GANMVKYLKQ LSRESFVDVI GVVTLPKEPL 180
181 TGTTQQVEIQ VRKVYCINKS LAKLPLSVED AARSEADIEA SLQTPSPAAR VNQDTRLNYR 240
241 VLDLRTPANQ AIFQLQYEVE YAFREKLRFK NFVGIHTPKL MAGSSEGGSA VFRLEYKGQP 300
301 ACLAQSPQLH KQMAICGDLR RVFEVGPVFR AEDSFTHRHL CEFVGLDVEM EIRKHYSEIM 360
361 DLVDELFVFI FTSLNERCKK ELQAVGKQYP FEPLKFLPKT LRLTFEEGVQ MLKEAGVEVD 420
421 PLGDLNTESE RKLGQLVLEK YNTEFYILHR YPKAVRPFYT MTCADNPLYS NSFDVFIRGE 480
481 EIISGAQRVH IPEVLEQRAG ECGIDVKTIS TYIDSFRYGA PLHGGFGVGL ERVVMLFCAL 540
541 NNIRKTSLFP RDPQRLSP
|
| Detection Method: |  |
| Confidence: | 117.0 |
| Match: | 1asyA |
| Description: | Aspartyl-tRNA synthetase (AspRS) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| lysine-tRNA ligase activity | 11.0047124677093 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 7.89468709683036 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 7.89468709683036 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 7.88410036819636 | bayes_pls_golite062009 |
| ligase activity | 6.92073480193262 | bayes_pls_golite062009 |
| asparagine-tRNA ligase activity | 5.29805946490109 | bayes_pls_golite062009 |
| aspartate-tRNA ligase activity | 3.80084837437429 | bayes_pls_golite062009 |
| phenylalanine-tRNA ligase activity | 3.4145644216516 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.90150581291897 | bayes_pls_golite062009 |
| glycine-tRNA ligase activity | 2.61548498770105 | bayes_pls_golite062009 |
| structural molecule activity | 2.54582212334303 | bayes_pls_golite062009 |
| proline-tRNA ligase activity | 2.52223115725965 | bayes_pls_golite062009 |
| serine-tRNA ligase activity | 2.46505535069103 | bayes_pls_golite062009 |
| threonine-tRNA ligase activity | 2.18642354927 | bayes_pls_golite062009 |
| catalytic activity | 1.99372273395202 | bayes_pls_golite062009 |
| alanine-tRNA ligase activity | 1.82594054955281 | bayes_pls_golite062009 |
| histidine-tRNA ligase activity | 1.72215103383322 | bayes_pls_golite062009 |
| transcription regulator activity | 1.67362693618722 | bayes_pls_golite062009 |
| binding | 1.54403712698597 | bayes_pls_golite062009 |
| nucleic acid binding | 1.48056625237411 | bayes_pls_golite062009 |
| DNA binding | 1.44496421928708 | bayes_pls_golite062009 |
| translation initiation factor activity | 1.27539679024898 | bayes_pls_golite062009 |
| transcription factor activity | 0.825973629967327 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.77755643935497 | bayes_pls_golite062009 |
| ribonuclease activity | 0.702449673647117 | bayes_pls_golite062009 |
| nuclease activity | 0.29926900436997 | bayes_pls_golite062009 |
