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View Structure Prediction Details

Protein: PEPR2_ARATH
Organism: Arabidopsis thaliana
Length: 1088 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEPR2_ARATH.

Description E-value Query
Range		 Subject
Range
gi|215769107, gi... - gi|50934275|ref|XP_476665.1| putative LRR receptor-like kinase [Oryza sativa (japonica cultivar-grou...
 644.0 [0..34] [1079..35]

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Predicted Domain #1
Region A:
Residues: [1-74] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNLGLLEIT LLCSLFVYFR IDSVSSLNSD GLALLSLLKH FDKVPLEVAS TWKENTSETT  60
   61 PCNNNWFGVI CDLS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.69897
Match: 1ogqA
Description: Polygalacturonase inhibiting protein PGIP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [75-403] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNVVETLNLS ASGLSGQLGS EIGELKSLVT LDLSLNSFSG LLPSTLGNCT SLEYLDLSNN  60
   61 DFSGEVPDIF GSLQNLTFLY LDRNNLSGLI PASVGGLIEL VDLRMSYNNL SGTIPELLGN 120
  121 CSKLEYLALN NNKLNGSLPA SLYLLENLGE LFVSNNSLGG RLHFGSSNCK KLVSLDLSFN 180
  181 DFQGGVPPEI GNCSSLHSLV MVKCNLTGTI PSSMGMLRKV SVIDLSDNRL SGNIPQELGN 240
  241 CSSLETLKLN DNQLQGEIPP ALSKLKKLQS LELFFNKLSG EIPIGIWKIQ SLTQMLVYNN 300
  301 TLTGELPVEV TQLKHLKKLT LFNNGFYGD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.69897
Match: 1a4yA
Description: Ribonuclease inhibitor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
cytoskeletal protein binding 2.84127269195072 bayes_pls_golite062009
binding 2.2362578005784 bayes_pls_golite062009
actin binding 1.83229753790722 bayes_pls_golite062009
protein binding 1.61093336454573 bayes_pls_golite062009
tropomyosin binding 0.826640590422063 bayes_pls_golite062009
catalytic activity 0.143741655309638 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [404-718] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPMSLGLNRS LEEVDLLGNR FTGEIPPHLC HGQKLRLFIL GSNQLHGKIP ASIRQCKTLE  60
   61 RVRLEDNKLS GVLPEFPESL SLSYVNLGSN SFEGSIPRSL GSCKNLLTID LSQNKLTGLI 120
  121 PPELGNLQSL GLLNLSHNYL EGPLPSQLSG CARLLYFDVG SNSLNGSIPS SFRSWKSLST 180
  181 LVLSDNNFLG AIPQFLAELD RLSDLRIARN AFGGKIPSSV GLLKSLRYGL DLSANVFTGE 240
  241 IPTTLGALIN LERLNISNNK LTGPLSVLQS LKSLNQVDVS YNQFTGPIPV NLLSNSSKFS 300
  301 GNPDLCIQAS YSVSA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 6.24
Match: 1ogqA
Description: Polygalacturonase inhibiting protein PGIP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
receptor activity 3.06241055332206 bayes_pls_golite062009
transmembrane receptor activity 2.96127377071509 bayes_pls_golite062009
molecular transducer activity 2.4085292238246 bayes_pls_golite062009
signal transducer activity 2.4085292238246 bayes_pls_golite062009
G-protein coupled receptor activity 1.82027406904384 bayes_pls_golite062009
receptor binding 1.62537779185792 bayes_pls_golite062009
protein kinase activity 1.62361443995556 bayes_pls_golite062009
binding 1.45712316705811 bayes_pls_golite062009
transmembrane receptor protein kinase activity 1.39264933048518 bayes_pls_golite062009
transmembrane receptor protein tyrosine kinase activity 1.27280680991092 bayes_pls_golite062009
collagen binding 1.2024797718455 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 1.18001333603647 bayes_pls_golite062009
kinase activity 1.13356668527648 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.972058696429347 bayes_pls_golite062009
nucleic acid binding 0.756214936132241 bayes_pls_golite062009
protein binding 0.629660151009639 bayes_pls_golite062009
glycosaminoglycan binding 0.260360463985414 bayes_pls_golite062009
pattern binding 0.218511437528696 bayes_pls_golite062009
polysaccharide binding 0.201838575206714 bayes_pls_golite062009
protein tyrosine kinase activity 0.176363297428464 bayes_pls_golite062009
extracellular matrix binding 0.137428338289148 bayes_pls_golite062009
protein-hormone receptor activity 0.0124918555036033 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [719-778] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IIRKEFKSCK GQVKLSTWKI ALIAAGSSLS VLALLFALFL VLCRCKRGTK TEDANILAEE  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.30103
Match: 1tqiA
Description: Crystal Structure of A. Fulgidus Rio2 Serine Protein Kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 4.16293725040361 bayes_pls_golite062009
DNA binding 3.85960773933959 bayes_pls_golite062009
nucleic acid binding 3.74239304440497 bayes_pls_golite062009
transcription factor activity 3.24303667191832 bayes_pls_golite062009
binding 3.09940998297931 bayes_pls_golite062009
sequence-specific DNA binding 1.72673242615672 bayes_pls_golite062009
transcription activator activity 1.54162365316011 bayes_pls_golite062009
transcription repressor activity 1.43956175575073 bayes_pls_golite062009
receptor binding 1.16948495981135 bayes_pls_golite062009
signal transducer activity 0.968719315363638 bayes_pls_golite062009
molecular transducer activity 0.968719315363638 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.854521850799801 bayes_pls_golite062009
protein binding 0.753698599635855 bayes_pls_golite062009
RNA polymerase II transcription factor activity 0.73259603641898 bayes_pls_golite062009
transcription factor binding 0.1124343912578 bayes_pls_golite062009

Predicted Domain #5
Region A:
Residues: [779-1088] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLSLLLNKVL AATDNLDDKY IIGRGAHGVV YRASLGSGEE YAVKKLIFAE HIRANQNMKR  60
   61 EIETIGLVRH RNLIRLERFW MRKEDGLMLY QYMPNGSLHD VLHRGNQGEA VLDWSARFNI 120
  121 ALGISHGLAY LHHDCHPPII HRDIKPENIL MDSDMEPHIG DFGLARILDD STVSTATVTG 180
  181 TTGYIAPENA YKTVRSKESD VYSYGVVLLE LVTGKRALDR SFPEDINIVS WVRSVLSSYE 240
  241 DEDDTAGPIV DPKLVDELLD TKLREQAIQV TDLALRCTDK RPENRPSMRD VVKDLTDLES 300
  301 FVRSTSGSVH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.522879
Match: 2qkwB
Description: No description for 2qkwB was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle