YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|12324503, gi|...
Organism: Arabidopsis thaliana
Length: 326 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12324503, gi|....

Description E-value Query
Range		 Subject
Range
gi|22297600, gi|... - gi|22297600|ref|NP_680847.1| GTP-binding protein Era [Thermosynechococcus elongatus BP-1], gi|222937...
 217.0 [0..18] [320..15]

Back

Predicted Domain #1
Region A:
Residues: [1-326] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLEDTTDL RLPSASEPIK NIVLVGRTGN GKSATGNSLI GKQVFRSETR ATGVTMKCET  60
   61 CVAVTPCGTG INVIDTPGLF DLSVSAEYLS QEIINCLVLA EDGLHAVVLV LSVRTRISQE 120
  121 EEATLNTLQV IFGSQIIDYL VVLFTGGDEL EANNMTLDDY LSKGCPEFLK TVLRLCGGRR 180
  181 ILFDNRTTDE GKKVKQVQEL LAHVAAIEKS TSGIPFTDEM HRKIQKEAET LREQQKEVES 240
  241 KDLAAAEIEK WKKHYQTEHD KNMNMMAEML GNRLREDSER QEKMLLALRD NLEISQRQNK 300
  301 LNELTDNEPD LIHCGVSLRR MPCNML

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.30103
Match: 1egaA
Description: GTPase Era, N-terminal domain; GTPase Era C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 3.22004696440172 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 2.62675237061531 bayes_pls_golite062009
transporter activity 2.3718896535756 bayes_pls_golite062009
nucleoside-triphosphatase activity 2.28726855139279 bayes_pls_golite062009
pyrophosphatase activity 2.23754609668547 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.21702600128327 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.21503003850174 bayes_pls_golite062009
transmembrane transporter activity 2.20270210450501 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 1.91976419488765 bayes_pls_golite062009
ion transmembrane transporter activity 1.8338258963054 bayes_pls_golite062009
ATPase activity 1.70670922135201 bayes_pls_golite062009
protein binding 1.57426731878465 bayes_pls_golite062009
cation transmembrane transporter activity 1.54743962081773 bayes_pls_golite062009
binding 1.5466198129438 bayes_pls_golite062009
nucleic acid binding 1.46966415668111 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 1.21226636702218 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 1.08648126474932 bayes_pls_golite062009
ATPase activity, coupled 1.02588328213159 bayes_pls_golite062009
transcription termination factor activity 1.01912880224809 bayes_pls_golite062009
DNA binding 0.99989910225815 bayes_pls_golite062009
purine nucleotide binding 0.929901285538132 bayes_pls_golite062009
nucleotide binding 0.922442819194247 bayes_pls_golite062009
purine ribonucleotide binding 0.920987930180051 bayes_pls_golite062009
ribonucleotide binding 0.920926158369519 bayes_pls_golite062009
metal ion transmembrane transporter activity 0.8454848433038 bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism 0.64314657796007 bayes_pls_golite062009
structural constituent of ribosome 0.564108637457946 bayes_pls_golite062009
substrate-specific transporter activity 0.464456497491373 bayes_pls_golite062009
GTPase activity 0.437665353870877 bayes_pls_golite062009
active transmembrane transporter activity 0.434775387083003 bayes_pls_golite062009
ATP binding 0.41092997612902 bayes_pls_golite062009
adenyl ribonucleotide binding 0.385813421701492 bayes_pls_golite062009
adenyl nucleotide binding 0.377870145186619 bayes_pls_golite062009
primary active transmembrane transporter activity 0.294474570607914 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.282352478532746 bayes_pls_golite062009
structural molecule activity 0.257322750476168 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0.220608508617331 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 0.219533217661421 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 0.219157471322311 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions 0.148669680164146 bayes_pls_golite062009
catalytic activity 0.10089766806364 bayes_pls_golite062009
transcription repressor activity 0.0588448474715566 bayes_pls_golite062009
motor activity 0.0492172159259601 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle