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View Structure Prediction Details

Protein: gi|15239761, gi|...
Organism: Arabidopsis thaliana
Length: 288 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15239761, gi|....

Description E-value Query
Range		 Subject
Range
RAB1A_LYMST - Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1
 184.0 [0..91] [288..1]

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Predicted Domain #1
Region A:
Residues: [1-93] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKVHEIAG KITPFCRKIV HVNRKWRIIE RVSIFGDFFR FLWRKIVSCS SIIEKPILYR  60
   61 RIVHKISSTA GDIFDGDDDT TTEPTVSGRR FGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.221849
Match: 1pujA
Description: Probable GTPase YlqF
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [94-288] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSDSDLVSLK ISLLGDCQTG KTTFVVKYVG DENQSFLEMT GLNLMDKTFY VQGVTISFSI  60
   61 WDVGGDEKRS KDHIPIACKD AVAILFMFDL TSRSTLNSVF GWYSQARKWN KTAIPILIGT 120
  121 KFDDFVRLPP NLQWTIVTQA RAYAKVMNAS LFFSSATHNI NVNKIFKFIL ARLFNLPWKI 180
  181 DRNLTLGEPI IDYDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.30103
Match: 1ukvY
Description: Structure of RabGDP-dissociation inhibitor in complex with prenylated YPT1 GTPase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
microtubule motor activity 3.4297361345158 bayes_pls_golite062009
transporter activity 3.10463051760206 bayes_pls_golite062009
transmembrane transporter activity 2.95886887664984 bayes_pls_golite062009
nucleoside-triphosphatase activity 2.95079405147356 bayes_pls_golite062009
pyrophosphatase activity 2.87427509025394 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.85499564954033 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.85178667290149 bayes_pls_golite062009
binding 2.64537357529343 bayes_pls_golite062009
primary active transmembrane transporter activity 2.61775212528604 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 2.61467977505707 bayes_pls_golite062009
motor activity 2.60481158518321 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 2.57552435627908 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 2.57107347424517 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 2.57054427875021 bayes_pls_golite062009
hydrolase activity 2.55157966585974 bayes_pls_golite062009
active transmembrane transporter activity 2.50494515048649 bayes_pls_golite062009
ATPase activity, coupled 2.43862163407966 bayes_pls_golite062009
ATPase activity 2.39535714892224 bayes_pls_golite062009
microfilament motor activity 1.94043121469819 bayes_pls_golite062009
actin binding 1.91455920245852 bayes_pls_golite062009
substrate-specific transporter activity 1.91091452720653 bayes_pls_golite062009
guanyl nucleotide binding 1.89320355239381 bayes_pls_golite062009
guanyl ribonucleotide binding 1.88721318481223 bayes_pls_golite062009
GTP binding 1.87900088157196 bayes_pls_golite062009
protein transporter activity 1.71214667007262 bayes_pls_golite062009
GTPase activity 1.6309422514633 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.56325751172863 bayes_pls_golite062009
GDP-dissociation inhibitor binding 1.53046363842187 bayes_pls_golite062009
cytoskeletal protein binding 1.50574672650697 bayes_pls_golite062009
actin-dependent ATPase activity 1.02902153401888 bayes_pls_golite062009
tubulin binding 1.01673904002272 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
ATP binding 0.98146619596929 bayes_pls_golite062009
ion transmembrane transporter activity 0.977237423302079 bayes_pls_golite062009
adenyl ribonucleotide binding 0.949788783884952 bayes_pls_golite062009
adenyl nucleotide binding 0.931486373329219 bayes_pls_golite062009
purine nucleotide binding 0.929901285538132 bayes_pls_golite062009
nucleotide binding 0.922442819194247 bayes_pls_golite062009
purine ribonucleotide binding 0.920987930180051 bayes_pls_golite062009
ribonucleotide binding 0.920926158369519 bayes_pls_golite062009
microtubule binding 0.902404986889887 bayes_pls_golite062009
nucleic acid binding 0.901460716954519 bayes_pls_golite062009
actin filament binding 0.880984396623832 bayes_pls_golite062009
protein methyltransferase activity 0.876296121718575 bayes_pls_golite062009
plus-end-directed microtubule motor activity 0.773586048423911 bayes_pls_golite062009
molecular transducer activity 0.683309012097319 bayes_pls_golite062009
signal transducer activity 0.683309012097319 bayes_pls_golite062009
histone methyltransferase activity 0.63002958837536 bayes_pls_golite062009
cation transmembrane transporter activity 0.557919489256916 bayes_pls_golite062009
DNA binding 0.479412476059825 bayes_pls_golite062009
protein transmembrane transporter activity 0.46552249844591 bayes_pls_golite062009
transcription regulator activity 0.312171320541728 bayes_pls_golite062009
kinase activity 0.221444513155443 bayes_pls_golite062009
cell surface binding 0.219818061655011 bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism 0.213018989352421 bayes_pls_golite062009
signal recognition particle binding 0.20866768220789 bayes_pls_golite062009
structural constituent of ribosome 0.208665086324262 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.176241137083092 bayes_pls_golite062009
protein binding 0.170837278876362 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 0.123304946374679 bayes_pls_golite062009
protein kinase activity 0.0364322017534667 bayes_pls_golite062009
macromolecule transmembrane transporter activity 0.00571427458217011 bayes_pls_golite062009
P-P-bond-hydrolysis-driven protein transmembrane transporter activity 0.00571427458217011 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle