| Protein: | PAB5_ARATH, PABP... |
| Organism: | Arabidopsis thaliana |
| Length: | 668 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAB5_ARATH, PABP....
| Description | E-value | Query Range |
Subject Range |
|
|
540.0 | [0..36] | [666..2] |
|
Region A: Residues: [1-219] |
1 11 21 31 41 51
| | | | | |
1 MVDQVIPNQP TVAAAAPPPF PAVSQVAAVA AAAAAAEALQ THPNSSLYVG DLDPSVNESH 60
61 LLDLFNQVAP VHNLRVCRDL THRSLGYAYV NFANPEDASR AMESLNYAPI RDRPIRIMLS 120
121 NRDPSTRLSG KGNVFIKNLD ASIDNKALYE TFSSFGTILS CKVAMDVVGR SKGYGFVQFE 180
181 KEETAQAAID KLNGMLLNDK QVFVGHFVRR QDRARSESG
|
| Detection Method: |  |
| Confidence: | 52.522879 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| structural molecule activity | 2.78501986457503 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| U2 snRNA binding | 1.34078165372485 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| transcription repressor activity | 1.06887262556449 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| eukaryotic initiation factor 4G binding | 0.597542453741953 | bayes_pls_golite062009 |
| hydrolase activity | 0.389390547875764 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.0459458211377304 | bayes_pls_golite062009 |
|
Region A: Residues: [220-403] |
1 11 21 31 41 51
| | | | | |
1 AVPSFTNVYV KNLPKEITDD ELKKTFGKYG DISSAVVMKD QSGNSRSFGF VNFVSPEAAA 60
61 VAVEKMNGIS LGEDVLYVGR AQKKSDREEE LRRKFEQERI SRFEKLQGSN LYLKNLDDSV 120
121 NDEKLKEMFS EYGNVTSCKV MMNSQGLSRG FGFVAYSNPE EALLAMKEMN GKMIGRKPLY 180
181 VALA
|
| Detection Method: | |
| Confidence: | 15.0 |
| Match: | 1qm9A |
| Description: | Polypyrimidine tract-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| structural molecule activity | 2.78501986457503 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| U2 snRNA binding | 1.34078165372485 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| transcription repressor activity | 1.06887262556449 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| eukaryotic initiation factor 4G binding | 0.597542453741953 | bayes_pls_golite062009 |
| hydrolase activity | 0.389390547875764 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.0459458211377304 | bayes_pls_golite062009 |
|
Region A: Residues: [404-535] |
1 11 21 31 41 51
| | | | | |
1 QRKEERQAHL QSLFTQIRSP GTMSPVPSPM SGFHHHPPGG PMSGPHHPMF IGHNGQGLVP 60
61 SQPMGYGYQV QFMPGMRPGA GPPNFMMPFP LQRQTQPGPR VGFRRGANNM QQQFQQQQML 120
121 QQNASRFMGG AG
|
| Detection Method: | |
| Confidence: | 1.22 |
| Match: | 1pk8A |
| Description: | Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [536-668] |
1 11 21 31 41 51
| | | | | |
1 NRRNGMEASA PQGIIPLPLN ASANSHNAPQ RSHKPTPLTI SKLASDLALA SPDKHPRMLG 60
61 DHLYPLVEQQ EPANAAKVTG MLLEMDQAEI LHLLESPEAL KAKVSEALDV LRRSADPAAV 120
121 SSVDDQFALS SSE
|
| Detection Method: | |
| Confidence: | 35.221849 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.69788763665792 | bayes_pls_golite062009 |
| eukaryotic initiation factor 4G binding | 5.42285329968544 | bayes_pls_golite062009 |
| mRNA binding | 5.31297072316889 | bayes_pls_golite062009 |
| single-stranded RNA binding | 4.51056428709072 | bayes_pls_golite062009 |
| nucleic acid binding | 3.78909647605682 | bayes_pls_golite062009 |
| binding | 2.76167454154417 | bayes_pls_golite062009 |
| poly(A) RNA binding | 2.66269581586161 | bayes_pls_golite062009 |
| poly-purine tract binding | 2.20136693536924 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.19350242454642 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.14692713780316 | bayes_pls_golite062009 |
| protein binding | 0.856075580719879 | bayes_pls_golite062009 |
| ligase activity | 0.38737123012383 | bayes_pls_golite062009 |
| catalytic activity | 0.287695754348243 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.223805219849164 | bayes_pls_golite062009 |
| translation initiation factor binding | 0.06484451210501 | bayes_pls_golite062009 |
