| Protein: | pdr-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 386 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pdr-1.
| Description | E-value | Query Range |
Subject Range |
|
|
216.0 | [0..8] | [386..1] |
|
Region A: Residues: [1-127] |
1 11 21 31 41 51
| | | | | |
1 MSDEISILIQ DRKTGQRRNL TLNINITGNI EDLTKDVEKL TEIPSDELEV VFCGKKLSKS 60
61 TIMRDLSLTP ATQIMLLRPK FNSHNENGAT TAKITTDSSI LGSFYVWCKN CDDVKRGKLR 120
121 VYCQKCS
|
| Detection Method: |  |
| Confidence: | 16.30103 |
| Match: | 1oqyA |
| Description: | Structure of the DNA repair protein hHR23a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| small conjugating protein ligase activity | 3.71144418714309 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 3.30801071565148 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 2.72499875710239 | bayes_pls_golite062009 |
| binding | 2.35732272412639 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.20811136250556 | bayes_pls_golite062009 |
| protein tag | 2.15059229834935 | bayes_pls_golite062009 |
| protein binding | 1.86841453215444 | bayes_pls_golite062009 |
| tubulin binding | 1.45941587790919 | bayes_pls_golite062009 |
| microtubule binding | 1.18009100234328 | bayes_pls_golite062009 |
| signal transducer activity | 0.84497408888751 | bayes_pls_golite062009 |
| molecular transducer activity | 0.84497408888751 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 0.753885975469065 | bayes_pls_golite062009 |
| hydrolase activity | 0.614233748923048 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.599634454232833 | bayes_pls_golite062009 |
| structural molecule activity | 0.576819726104993 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.460490130771208 | bayes_pls_golite062009 |
| kinase activity | 0.456485925435821 | bayes_pls_golite062009 |
| SUMO ligase activity | 0.412533160717297 | bayes_pls_golite062009 |
| protein kinase activity | 0.353433845798143 | bayes_pls_golite062009 |
| GTPase regulator activity | 0.334601927012824 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.319650090047305 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 0.315664702789604 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.162163146322721 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.135340673572074 | bayes_pls_golite062009 |
|
Region A: Residues: [128-243] |
1 11 21 31 41 51
| | | | | |
1 STSVLVKSEP QNWSDVLKSK RIPAVCEECC TPGLFAEFKF KCLACNDPAA ALTHVRGNWQ 60
61 MTECCVCDGK EKVIFDLGCN HITCQFCFRD YLLSQLERFG FVNQPPHGFT IFCPYP
|
| Detection Method: | |
| Confidence: | 5.0 |
| Match: | 1wimA |
| Description: | Solution Structure of the RING finger Domain of the human UbcM4-interacting Protein 4 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ubiquitin-protein ligase activity | 5.97121728620188 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 5.78935175140238 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 4.75377804653841 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 2.57382484274962 | bayes_pls_golite062009 |
| binding | 2.35777587677918 | bayes_pls_golite062009 |
| protein binding | 1.5975811408548 | bayes_pls_golite062009 |
| ligase activity | 1.28164271879607 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 0.786612602432575 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 0.549461161056205 | bayes_pls_golite062009 |
| hydrolase activity | 0.52386813728704 | bayes_pls_golite062009 |
| transcription factor binding | 0.40077737329629 | bayes_pls_golite062009 |
| transcription regulator activity | 0.345429067492564 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 0.159023519781458 | bayes_pls_golite062009 |
| catalytic activity | 0.14112008370434 | bayes_pls_golite062009 |
| nucleic acid binding | 0.125491277540945 | bayes_pls_golite062009 |
| transcription repressor activity | 0.0198730391417716 | bayes_pls_golite062009 |
|
Region A: Residues: [244-310] |
1 11 21 31 41 51
| | | | | |
1 GCNRVVQDVH HFHIMGQTSY SEYQRKATER LIAVDDKGVT CPNVSCGQSF FWEPYDDDGR 60
61 SQCPDCF
|
| Detection Method: | |
| Confidence: | 1.3 |
| Match: | 2jmoA |
| Description: | No description for 2jmoA was found. |
|
Region A: Residues: [311-386] |
1 11 21 31 41 51
| | | | | |
1 FSFCRKCFER NCVCQSEDDL TRTTIDATTR RCPKCHVATE RNGGCAHIHC TSCGMDWCFK 60
61 CKTEWKEECQ WDHWFN
|
| Detection Method: | |
| Confidence: | 8.09691 |
| Match: | 1wd2A |
| Description: | Solution Structure of the C-terminal RING from a RING-IBR-RING (TRIAD) motif |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ubiquitin-protein ligase activity | 5.97121728620188 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 5.78935175140238 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 4.75377804653841 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 2.57382484274962 | bayes_pls_golite062009 |
| binding | 2.35777587677918 | bayes_pls_golite062009 |
| protein binding | 1.5975811408548 | bayes_pls_golite062009 |
| ligase activity | 1.28164271879607 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 0.786612602432575 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 0.549461161056205 | bayes_pls_golite062009 |
| hydrolase activity | 0.52386813728704 | bayes_pls_golite062009 |
| transcription factor binding | 0.40077737329629 | bayes_pls_golite062009 |
| transcription regulator activity | 0.345429067492564 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 0.159023519781458 | bayes_pls_golite062009 |
| catalytic activity | 0.14112008370434 | bayes_pls_golite062009 |
| nucleic acid binding | 0.125491277540945 | bayes_pls_golite062009 |
| transcription repressor activity | 0.0198730391417716 | bayes_pls_golite062009 |
