| Protein: | CE28417 |
| Organism: | Caenorhabditis elegans |
| Length: | 737 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28417.
| Description | E-value | Query Range |
Subject Range |
|
|
419.0 | [0..20] | [736..223] |
|
Region A: Residues: [1-619] |
1 11 21 31 41 51
| | | | | |
1 MIVYSLLLLI LYDFLPKVVT FDTVCIGLCH CVGNVVDCSS LDLSEIPTTI PNNTRILLLS 60
61 DNEIESIDKS RLKGFYFLQT LDISNNIIRH IDFEFFYNLP NLKILNIRKN RLARIPRGSH 120
121 ELGHLEKLDL RSNLISTVTS EELSYLAAVR SVDLSRNLIS YLPKPTTSAK VNIEKLDLAS 180
181 NSITDIGTDH FSSFNTLVTL KLARNHITTL NQFSFSRLRK LESLDLTRNM IREVRFLAFN 240
241 QLPSLQNVSL ARNDVYRLDD GMFYACEGLK HLNLSTNRVQ AVTEGWMFGL TSLEVLDLSY 300
301 NQIQSFHISS WSHTPKLKWL SLHSNRIQSL PSGSFRVLRQ LEELILSANS IDSLHKFALV 360
361 GMSSLHKLDL SSNTLAVCVE DGAVLYNTSM PFLRSLRFTN NQLRVIPKRA FERFPALEEL 420
421 DLTDNPIATI HPEAFEPLEL KRLVMNSSSI LCDCQISWLA SWIYRLKLDK SSIIAKCSYP 480
481 PPLADLYVVA IDTANLTCHN DSPRAKIVRQ PVEVSTLIGE KARFTCNVYG ASPLSIEWRV 540
541 MENGQPRVLV QDSATFLSIN RTAVVNGTFD ERELAAAELL LDNVAMTDNS EYQCVARNRF 600
601 GSDFSTHVKL QVYQAPKFT
|
| Detection Method: |  |
| Confidence: | 53.522879 |
| Match: | 2a0zA |
| Description: | The molecular structure of toll-like receptor 3 ligand binding domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [620-737] |
1 11 21 31 41 51
| | | | | |
1 YTPEDMPLLV GQTAKFLCAA TGTPRPEIKW AFEQIPFPAA EARRLYVTPN DDHIYIMNVT 60
61 KEDQGAYTCH ATNVAGQTQA SANLIVFELI YCSNSLSFTC LFSQTQVFRK LLPLPRKP
|
| Detection Method: | |
| Confidence: | 14.522879 |
| Match: | 1qz1A |
| Description: | Crystal Structure of the Ig 1-2-3 fragment of NCAM |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| receptor activity | 4.00123250685257 | bayes_pls_golite062009 |
| transmembrane receptor activity | 3.81769911097805 | bayes_pls_golite062009 |
| binding | 3.17641566810715 | bayes_pls_golite062009 |
| molecular transducer activity | 3.10913345555941 | bayes_pls_golite062009 |
| signal transducer activity | 3.10913345555941 | bayes_pls_golite062009 |
| extracellular matrix structural constituent | 2.79767000113033 | bayes_pls_golite062009 |
| nucleic acid binding | 2.13338563453164 | bayes_pls_golite062009 |
| transcription regulator activity | 2.09812904791121 | bayes_pls_golite062009 |
| receptor binding | 1.97970998659961 | bayes_pls_golite062009 |
| DNA binding | 1.94748821300258 | bayes_pls_golite062009 |
| olfactory receptor activity | 1.79502606732682 | bayes_pls_golite062009 |
| fibroblast growth factor 1 binding | 1.68957060156689 | bayes_pls_golite062009 |
| antigen binding | 1.45942243170397 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 1.36789541796983 | bayes_pls_golite062009 |
| transmembrane receptor protein kinase activity | 1.30657787244536 | bayes_pls_golite062009 |
| transcription repressor activity | 1.23901105851653 | bayes_pls_golite062009 |
| growth factor binding | 1.21242049144353 | bayes_pls_golite062009 |
| transcription factor activity | 1.19760118797575 | bayes_pls_golite062009 |
| protein binding | 1.17809977833322 | bayes_pls_golite062009 |
| transmembrane receptor protein tyrosine kinase activity | 1.08793833350628 | bayes_pls_golite062009 |
| platelet-derived growth factor receptor binding | 1.04423921087796 | bayes_pls_golite062009 |
| peptide antigen binding | 1.03871842737922 | bayes_pls_golite062009 |
| G-protein coupled receptor activity | 1.02428106476324 | bayes_pls_golite062009 |
| fibroblast growth factor binding | 0.940492274094239 | bayes_pls_golite062009 |
| fibroblast growth factor receptor activity | 0.83975918695548 | bayes_pls_golite062009 |
| protein complex binding | 0.83543827718565 | bayes_pls_golite062009 |
| peptide binding | 0.729048089532569 | bayes_pls_golite062009 |
| integrin binding | 0.599569390248921 | bayes_pls_golite062009 |
| protein kinase activity | 0.274138794214258 | bayes_pls_golite062009 |
| carbohydrate binding | 0.0389714345254086 | bayes_pls_golite062009 |
