| Protein: | sfa-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 699 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sfa-1.
| Description | E-value | Query Range |
Subject Range |
|
|
303.0 | [0..131] | [600..1133] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MSKTGGNTEP MPFIRKWGNE AGEDLGAAPS ATAAPPPALV VPTISSMSSG DNKSPSRSES 60
61 VSDRKRDRSR SRDRDRKKDR KKKDRSRERD RERRSSRSRS RSPRDRDRER RRRRSRSPPP 120
121 RRRSRSGGDR RRRER
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [136-259] |
1 11 21 31 41 51
| | | | | |
1 SPPSMVPNSP QRVKEPVINP LIREDLAAAV ESGAVPVEAV QAGAVVALNP AKKERRSRWS 60
61 TTKSFVPGMP TILPADLTED QRNAYLLQLE IEDATRKLRL ADFGVAEGRE RSPSPEPVYD 120
121 ANGK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [260-416] |
1 11 21 31 41 51
| | | | | |
1 RLNTREVRKR QELEQLRHEK IQALLKINPN FKPPADYRAP NIRLHDKVWI PQEQFPDLNF 60
61 VGLLIGPRGN TLKSLEAETG AKIIIRGKGS IKEGKLTNRL GPMPGENEPL HAYVTGTDMN 120
121 VIKKACEKIK QVIAEATALP DNNELRKLQL RELALLN
|
| Detection Method: | |
| Confidence: | 32.39794 |
| Match: | 1k1gA |
| Description: | RNA splicing factor 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 4.28581120742478 | bayes_pls_golite062009 |
| RNA binding | 4.07234389285213 | bayes_pls_golite062009 |
| binding | 3.45962790790935 | bayes_pls_golite062009 |
| mRNA binding | 2.74771386314615 | bayes_pls_golite062009 |
| protein binding | 2.21586499514642 | bayes_pls_golite062009 |
| transcription regulator activity | 2.01194399592256 | bayes_pls_golite062009 |
| DNA binding | 1.78469836520678 | bayes_pls_golite062009 |
| transcription factor activity | 0.866815968834173 | bayes_pls_golite062009 |
| 0.649281624091344 | bayes_pls_golite062009 | |
| structure-specific DNA binding | 0.64468203163713 | bayes_pls_golite062009 |
| transcription repressor activity | 0.594072241231183 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.28490151670131 | bayes_pls_golite062009 |
| transcription activator activity | 0.210494225017032 | bayes_pls_golite062009 |
| transcription factor binding | 0.139588254197875 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
|
Region A: Residues: [417-509] |
1 11 21 31 41 51
| | | | | |
1 GTFRPEDLAN GARCSNCGSD EHKSWECPDA PNVTNQIKCT NCGAFGHISK DCKNPKGMYA 60
61 SEAGMDDEYS ALMAELGETP AAGAGAGGGG GGH
|
| Detection Method: | |
| Confidence: | 2.05 |
| Match: | 2ihxA |
| Description: | No description for 2ihxA was found. |
|
Region A: Residues: [510-699] |
1 11 21 31 41 51
| | | | | |
1 VASAGGGISA MTGAGGEAPG GGAGGRGGGA HGGAGRGGGY QGGRGGGRGF QNPRDLFGPP 60
61 KGEEEQQQQA NASMQHGYYD HYQQYAYPNQ YQQPYGAPAP PGGSAYGHQQ QQQQQQQQDY 120
121 SDFYTSPGAR GGAGAKANKG WYGSGGGSSM PMPVPPPGGL GGFMPPPPPP PPMPGDLSSL 180
181 LAAAPPPPPS
|
| Detection Method: | |
| Confidence: | 5.0 |
| Match: | 1y0fB |
| Description: | No description for 1y0fB was found. |
