| Protein: | twk-18 |
| Organism: | Caenorhabditis elegans |
| Length: | 461 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for twk-18.
| Description | E-value | Query Range |
Subject Range |
|
|
215.0 | [0..66] | [444..83] |
|
Region A: Residues: [1-186] |
1 11 21 31 41 51
| | | | | |
1 MAIVAQGVST ILTTFQKTFK GLLPLIILVA YTLLGAWIFW MIEGENEREM LIEQQKERDE 60
61 LIRRTVYKIN QLQIKRQRRL MTAEEEYNRT AKVLTTFQET LGIVPADMDK DIHWTFLGSI 120
121 FYCMTVYTTI GYGNIVPGTG WGRFATILYA FIGIPLTVLS LYCLGSLFAK GCKMLWRFFL 180
181 KSTRVV
|
| Detection Method: |  |
| Confidence: | 30.69897 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [187-461] |
1 11 21 31 41 51
| | | | | |
1 SKDLSNKISE AADNIEEGTT AITPSAEKTE NNDDDLLSFP ISGLLLITVI WVIFCAVLFT 60
61 FLEEWDFGTS LYFTLISFTT IGFGDILPSD YDFMPIVGVL LLIGLSLVST VMTLIQQQIE 120
121 ALASGMKDNI DQEYARALNE AREDGEVDEH VDPEEDPENN KKSFDAVISR MNWSKRGLYY 180
181 LLPDSQKKEL AKQSEKKMGR KSIKIQTDND LLETLIREEI LKAELNNEMH KYTAPRSSHQ 240
241 PKLVYSDVRE KEVPIEVVRV EHFNHGNEDY LEHDI
|
| Detection Method: | |
| Confidence: | 11.221849 |
| Match: | 1p7bA |
| Description: | Inward rectifier potassium channel Kirbac1.1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| potassium channel activity | 6.4331378592544 | bayes_pls_golite062009 |
| voltage-gated potassium channel activity | 6.39751759555879 | bayes_pls_golite062009 |
| voltage-gated cation channel activity | 6.27599868772094 | bayes_pls_golite062009 |
| voltage-gated ion channel activity | 6.14572423982603 | bayes_pls_golite062009 |
| voltage-gated channel activity | 6.13745115468656 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 5.06264960439093 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 4.86252983188139 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 4.77144021609018 | bayes_pls_golite062009 |
| cation channel activity | 4.45742516382134 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 4.3961579058414 | bayes_pls_golite062009 |
| inward rectifier potassium channel activity | 4.13359972196575 | bayes_pls_golite062009 |
| ion channel activity | 3.86720832958006 | bayes_pls_golite062009 |
| gated channel activity | 3.81381731911499 | bayes_pls_golite062009 |
| substrate-specific channel activity | 3.76052840244313 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 3.7587607940377 | bayes_pls_golite062009 |
| channel activity | 3.7587607940377 | bayes_pls_golite062009 |
| transporter activity | 2.93091397928047 | bayes_pls_golite062009 |
| transmembrane transporter activity | 2.82224868778929 | bayes_pls_golite062009 |
| G-protein activated inward rectifier potassium channel activity | 2.75125247009886 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.54207434157938 | bayes_pls_golite062009 |
| ATP-activated inward rectifier potassium channel activity | 2.06424227369337 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 1.70106533585704 | bayes_pls_golite062009 |
| ligand-gated channel activity | 1.70106533585704 | bayes_pls_golite062009 |
| binding | 1.53091146101223 | bayes_pls_golite062009 |
| protein binding | 1.48353517714382 | bayes_pls_golite062009 |
