| Protein: | cyn-13 |
| Organism: | Caenorhabditis elegans |
| Length: | 331 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cyn-13.
| Description | E-value | Query Range |
Subject Range |
|
|
207.0 | [0..9] | [302..5] |
|
Region A: Residues: [1-115] |
1 11 21 31 41 51
| | | | | |
1 MNTNFPHNRK RTLYVGGFTE DVTEKVLMAA FIPFGDVVAI SIPMDYESGK HRGFGFVEFD 60
61 MAEDAAMAID NMNESELFGK TIRVNFARPP KATERSQKPV WADDEWLKKY GRGGE
|
| Detection Method: |  |
| Confidence: | 18.0 |
| Match: | 2cqbA |
| Description: | Solution Structure of the RNA recognition motif in Peptidyl-prolyl cis-trans isomerase E |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.61627913603672 | bayes_pls_golite062009 |
| snRNA binding | 3.73900239153067 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.70790653818369 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| telomeric DNA binding | 1.77419984594718 | bayes_pls_golite062009 |
| structural molecule activity | 1.56454315220334 | bayes_pls_golite062009 |
| protein phosphatase 2B binding | 1.48959622050982 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.14445638261529 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.970421843909091 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.87522799562879 | bayes_pls_golite062009 |
| transporter activity | 0.628672636801176 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| hydrolase activity | 0.520121701073354 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.505106991526286 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.220812525173636 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.182749906784328 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.096231856558874 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.059732432409948 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.0510390778764699 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.0484248928275733 | bayes_pls_golite062009 |
| receptor binding | 0.0328291651348667 | bayes_pls_golite062009 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 4.5592374722947E-4 | bayes_pls_golite062009 |
|
Region A: Residues: [116-179] |
1 11 21 31 41 51
| | | | | |
1 AAAEEDGDAE KAATSSSSAS TKLPRVYLGV KIGIRYIGRI VIELRTDVTP KTAENFRCLC 60
61 TGER
|
| Detection Method: | |
| Confidence: | 1.44 |
| Match: | 1z81A |
| Description: | Crystal Structure of cyclophilin from Plasmodium yoelii. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [180-331] |
1 11 21 31 41 51
| | | | | |
1 GFGYEGSIFH RIIPKFMLQG GDFTKGDGTG GKSIYGTKFD DENFTLRHTM PGTVSMANCG 60
61 ANTNGSQFFI CTEKTDWLDG KHVVFGHVVE GMNIVRQVEQ QGTPSGKPQM VVKIVESGEI 120
121 EPEKRIAAEK LAQKAVVPGA EIQEPLPQAM ET
|
| Detection Method: | |
| Confidence: | 26.522879 |
| Match: | 2r99A |
| Description: | No description for 2r99A was found. |
