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View Structure Prediction Details

Protein: hsd-1
Organism: Caenorhabditis elegans
Length: 462 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hsd-1.

Description E-value Query
Range
Subject
Range
gi|41205692 - gi|41205692|gb|AAR99612.1| dTDP-glucose 4,6-dehydratase [Geobacillus stearothermophilus]
300.0 [0..45] [431..3]

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Predicted Domain #1
Region A:
Residues: [1-462]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIKRLSMRL KKGIHRSWNR MTSLEAGLEE EKEIKIVEEP EPRPWKVLIT GGAGHLAENL  60
   61 VAKLEEMTRD SIRPKIREML EKEMPAVIST KVDKEVEKRL PMYIQIVLVD VLEPRGRVLK 120
  121 HHVAFVKCSF DDECTMKTAL EQVDTVYHLA AVGMTGQYAR DRKACMDINA VGTMNLLIWA 180
  181 RNSGVQRFIY TSSVGVVFSG EPMYNATEEV GYPDDFYNYY CESKAHAERI VQKASGHRMR 240
  241 TTVLRFNGIY GPGEKRVTER VVKFMLTGMW IATCKPNGVE AQTQLSSVAN CIQGLVKAEL 300
  301 ALRWSDTPHG QIYNIMDKTP VGTFSFWTPL NIALGFSSSM ITVPATPIRL FAYLSQIIAD 360
  361 RMRIDPIVSV LEVDLLLVNN TFNIEKAERD LGYEPSVSAI PEIIEHYLHR LPPDVVRPKG 420
  421 RSDFYVKVAV LVLGTILIFV AVFSFTFWMY LIFQRLSRWN PF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.39794
Match: 1z45A
Description: Crystal structure of the gal10 fusion protein galactose mutarotase/UDP-galactose 4-epimerase from Saccharomyces cerevisiae complexed with NAD, UDP-glucose, and galactose
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
steroid dehydrogenase activity 3.70115036051018 bayes_pls_golite062009
steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 3.56748749904419 bayes_pls_golite062009
retinol dehydrogenase activity 3.08644105481774 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 2.27417613545298 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 1.97774592602866 bayes_pls_golite062009
3-alpha(17-beta)-hydroxysteroid dehydrogenase (NAD+) activity 1.80383455383329 bayes_pls_golite062009
catalytic activity 1.79741889688267 bayes_pls_golite062009
ethanol binding 1.43137718523288 bayes_pls_golite062009
retinol binding 1.36627553306209 bayes_pls_golite062009
C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity 1.03845584151228 bayes_pls_golite062009
DNA binding 0.925435782369235 bayes_pls_golite062009
receptor activity 0.870552554168634 bayes_pls_golite062009
transmembrane receptor activity 0.848495583450678 bayes_pls_golite062009
transcription regulator activity 0.830735196151903 bayes_pls_golite062009
nucleic acid binding 0.805690663404413 bayes_pls_golite062009
benzaldehyde dehydrogenase activity 0.74738022559788 bayes_pls_golite062009
retinoid binding 0.67821643688355 bayes_pls_golite062009
alcohol dehydrogenase (NAD) activity 0.65743456407889 bayes_pls_golite062009
signal transducer activity 0.620476349006324 bayes_pls_golite062009
molecular transducer activity 0.620476349006324 bayes_pls_golite062009
11-beta-hydroxysteroid dehydrogenase activity 0.617411823427239 bayes_pls_golite062009
isoprenoid binding 0.56322670082984 bayes_pls_golite062009
binding 0.553666136934364 bayes_pls_golite062009
testosterone 17-beta-dehydrogenase activity 0.532187027260366 bayes_pls_golite062009
coenzyme binding 0.46570602169425 bayes_pls_golite062009
NAD or NADH binding 0.44922383360529 bayes_pls_golite062009
oxidoreductase activity 0.39101464838432 bayes_pls_golite062009
transcription factor activity 0.288669328257774 bayes_pls_golite062009
all-trans retinal binding 0.218888750914841 bayes_pls_golite062009
NADPH:quinone reductase activity 0.0435917990586205 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle