| Protein: | aph-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 721 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for aph-2.
| Description | E-value | Query Range |
Subject Range |
|
|
758.0 | [0..3] | [715..19] |
|
Region A: Residues: [1-195] |
1 11 21 31 41 51
| | | | | |
1 MKKWLVIVLI IAGIRCDGFS DQVFRTLFIG EGNACYRTFN KTHEFGCQAN RENENGLIVR 60
61 IDKQEDFKNL DSCWNSFYPK YSGKYWALLP VNLIRRDTIS QLKSSKCLSG IVLYNSGESI 120
121 HPGDESTAAS HDAECPNAAS DYYLQDKNEE YCERKINSRG AITRDGLMKI DWRIQMVFID 180
181 NSTDLEIIEK CYSMF
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [196-515] |
1 11 21 31 41 51
| | | | | |
1 NKPKEDGSSG YPYCGMSFRL ANMAAGNSEI CYRRGKNDAK LFQMNIDSGD APQLCGAMHS 60
61 DNIFAFPTPI PTSPTNETII TSKYMMVTAR MDSFGMIPEI SVGEVSVLTS IISVLAAARS 120
121 MGTQIEKWQK ASNTSNRNVF FAFFNGESLD YIGSGAAAYQ MENGKFPQMI RSDRTHIHPI 180
181 RPNELDYILE VQQIGVAKGR KYYVHVDGER YQQNKTQTDR VIDRIERGLR SHAFDLEKPS 240
241 GSGDRVPPAS WHSFAKADAH VQSVLLAPYG KEYEYQRVNS ILDKNEWTED EREKAIQEIE 300
301 AVSTAILAAA ADYVGVETDE
|
| Detection Method: | |
| Confidence: | 34.0 |
| Match: | 1cp7A |
| Description: | Aminopeptidase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 4.69852272549237 | bayes_pls_golite062009 |
| hydrolase activity | 4.23257784904124 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 4.21193944512431 | bayes_pls_golite062009 |
| metallopeptidase activity | 2.04062448553328 | bayes_pls_golite062009 |
| exopeptidase activity | 1.5759162922092 | bayes_pls_golite062009 |
| catalytic activity | 1.3989281287879 | bayes_pls_golite062009 |
| binding | 0.899461642061592 | bayes_pls_golite062009 |
| carboxypeptidase activity | 0.891655769761122 | bayes_pls_golite062009 |
| endopeptidase activity | 0.529831416345723 | bayes_pls_golite062009 |
| metalloexopeptidase activity | 0.472688733072762 | bayes_pls_golite062009 |
| nucleic acid binding | 0.385009026435495 | bayes_pls_golite062009 |
| metallocarboxypeptidase activity | 0.180859448845431 | bayes_pls_golite062009 |
| transcription regulator activity | 0.140274984043468 | bayes_pls_golite062009 |
| aminopeptidase activity | 0.0966237570696103 | bayes_pls_golite062009 |
| protein binding | 0.00854198798870509 | bayes_pls_golite062009 |
|
Region A: Residues: [516-721] |
1 11 21 31 41 51
| | | | | |
1 VVAKVDKKLI TTIFDCLITS NFWFDCDFMQ KLDGGRYHKL FNSYGFNQKS TYISMESHTA 60
61 FPTVLHWLTI FALGSDKETL NVKSEKSCSH LGQFQAMYTY TWQPNPYTGN FSCLKSAIVK 120
121 KVMVSPAVDS QTPEEEMNTR YSTWMESVYI IESVNLYLME DASFEYTMIL IAVISALLSI 180
181 FAVGRCSETT FIVDEGEPAA EGGEPL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
