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View Structure Prediction Details

Protein: pps-1
Organism: Caenorhabditis elegans
Length: 652 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pps-1.

Description E-value Query
Range		 Subject
Range
gi|50746429 - gi|50746429|ref|XP_420493.1| PREDICTED: similar to Bifunctional 3-phosphoadenosine 5-phosphosulfate ...
 698.0 [0..26] [651..395]

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Predicted Domain #1
Region A:
Residues: [1-652] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTPRDENNE GDAMPMLKKP RYSSLSGQST NITYQEHTIS REERAAAVGR HEGFRGCTIW  60
   61 FTGLSGAGKT TISFALERTL NKLGIPCYGL DGDNIRHGLC KNLGFSKEDR QENIRRVAEV 120
  121 AKLFADSGMI CLAAFISPFQ EDRLDARKIH ESENVKFIEV HVSTTLEVCE QRDPKQLYKK 180
  181 ARAGQILGFT GIDSAYEPPE NAEIILDAGK DGVQQCVQKV LDHLESKGLL PEQIPDVPAV 240
  241 RELFVSDDLT VAELLKESQN LPTVELTKVD LQWLQVLAEG WATPLSGFMR ERQYLQSMHF 300
  301 GQLLDLKHKV AFVGEKSDDK EDSWPMMDDI NQSIPIVLPI SDDVKKGLEG VTRIALKYNG 360
  361 QVYAILSDPE IFEHRKDERV CRQFGTNDPR HPAVAQVLES GNWLLGGDVA VVQKIQFNDG 420
  421 LDKYRKTPNE LRAIFAEKNA DAVFAFQLRN PIHNGHALLM RDTREKLLAE HKNPILLLHP 480
  481 LGGWTKDDDV PLDIRIKQHE AVIAERVLDP EWTVLSIFPS PMMYAGPTEV QWHARSRIAA 540
  541 GIQHYIVGRD PAGIQKPGSP DALYETTHGA KVLSMAPGLS ALHILPFRVA AYDKTAKKMS 600
  601 FFDTSRKEDF ENISGTKMRG LARNGDTPPE GFMAPTAWEV LAGYYKSLQN SN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1x6vB
Description: The crystal structure of human 3'-phosphoadenosine-5'-phosphosulfate synthetase 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
adenylylsulfate kinase activity 4.068185545789 bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds 3.92128383038213 bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds 3.92128383038213 bayes_pls_golite062009
aminoacyl-tRNA ligase activity 3.90993291504728 bayes_pls_golite062009
ligase activity 2.70329113454728 bayes_pls_golite062009
catalytic activity 2.37674226834122 bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism 2.26377662826945 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 1.21652204616597 bayes_pls_golite062009
glutamate-tRNA ligase activity 1.10341596187455 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 1.08234153014428 bayes_pls_golite062009
nucleotidyltransferase activity 1.06535308346284 bayes_pls_golite062009
binding 0.914435503471172 bayes_pls_golite062009
DNA binding 0.702147676354075 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 0.698936698180809 bayes_pls_golite062009
ion transmembrane transporter activity 0.660008573310899 bayes_pls_golite062009
nucleic acid binding 0.623161608923414 bayes_pls_golite062009
cation transmembrane transporter activity 0.569070845075586 bayes_pls_golite062009
methionine-tRNA ligase activity 0.485575109636367 bayes_pls_golite062009
tyrosine-tRNA ligase activity 0.366166475448387 bayes_pls_golite062009
nicotinate-nucleotide adenylyltransferase activity 0.313342639191268 bayes_pls_golite062009
transcription regulator activity 0.287777990975748 bayes_pls_golite062009
adenylyltransferase activity 0.19674866587635 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.147579541298736 bayes_pls_golite062009
pyrophosphatase activity 0.133017653323467 bayes_pls_golite062009
sulfate adenylyltransferase activity 0.131596240193754 bayes_pls_golite062009
nucleobase, nucleoside, nucleotide kinase activity 0.12351419478929 bayes_pls_golite062009
sulfate adenylyltransferase (ATP) activity 0.118324944285084 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.113504049290503 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.111293884322157 bayes_pls_golite062009
helicase activity 0.0775311459068899 bayes_pls_golite062009
nicotinamide-nucleotide adenylyltransferase activity 0.0296738549832283 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 0.0239432604471979 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle