| Protein: | prp-4 |
| Organism: | Caenorhabditis elegans |
| Length: | 496 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for prp-4.
| Description | E-value | Query Range |
Subject Range |
|
|
556.0 | [0..2] | [494..1191] |
|
Region A: Residues: [1-88] |
1 11 21 31 41 51
| | | | | |
1 MAENGNFAVP APPRQFGSLA NAESVNAILN AQQQNHGPTV SLERMEVSNQ ADSRHDAEMF 60
61 AEFDRRRRAR TLTLPTDDVQ VKLKLRAL
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [89-496] |
1 11 21 31 41 51
| | | | | |
1 NQPICLFGED ALDRRERLRA LLSTMSEDEI AAVLHTDEVN ADKADEETVT WYHRGPIELR 60
61 MARVSIADFS LRKAKLRLDK AREEAARPAH EKALARQEAH KWVQQINLHA SQVADTRPVA 120
121 FCEFSADSEH IVTAGWSGSV AVWKREQCAQ EIKFIGHSSQ AGCARFHPGA FTQNDYSSLN 180
181 VVSCSYDGTV LLWSLSQESP IGELEQHPQR VSKVAFHPNG HHLATACFDS TWRMYDLTTK 240
241 KELLYQEGHS KSVADVAFHP DGSVALTGGH DCYGRVWDMR TGRCIMFLDG HTKEIHSVEW 300
301 MPNGYEMITG SSDNSMKVWD LRMRRNTYTM PAHTSVVTRV RADAAGQYLV SASFDCTLKM 360
361 WSTTGWQPLR QLQGHDTRIL CVDISPDGQW MCSSAFDRTF KLWAQSDY
|
| Detection Method: | |
| Confidence: | 88.69897 |
| Match: | 1vyhC |
| Description: | PAF-AH Holoenzyme: Lis1/Alfa2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| dynactin binding | 7.11157019623125 | bayes_pls_golite062009 |
| 6.67009948605948 | bayes_pls_golite062009 | |
| GTPase activity | 4.02994814377904 | bayes_pls_golite062009 |
| actin binding | 3.86142918698875 | bayes_pls_golite062009 |
| acetyltransferase activity | 3.85374902981345 | bayes_pls_golite062009 |
| RNA binding | 3.77273677738815 | bayes_pls_golite062009 |
| histone methyltransferase activity (H3-K4 specific) | 3.53507344623686 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 3.1056443224755 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 3.00422709839505 | bayes_pls_golite062009 |
| tubulin binding | 2.76945430061825 | bayes_pls_golite062009 |
| microtubule binding | 2.72684103222924 | bayes_pls_golite062009 |
| dynein binding | 2.54821997913979 | bayes_pls_golite062009 |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| transcription regulator activity | 2.3610959773142 | bayes_pls_golite062009 |
| nucleic acid binding | 2.30918780727915 | bayes_pls_golite062009 |
| transcription repressor activity | 2.29049708962212 | bayes_pls_golite062009 |
| snoRNA binding | 2.27164613239345 | bayes_pls_golite062009 |
| protein binding | 2.26925404328312 | bayes_pls_golite062009 |
| actin filament binding | 2.0735069176589 | bayes_pls_golite062009 |
| DNA binding | 1.71685536470455 | bayes_pls_golite062009 |
| G-protein-coupled receptor binding | 1.63631972867316 | bayes_pls_golite062009 |
| acyltransferase activity | 1.6301799051509 | bayes_pls_golite062009 |
| transferase activity, transferring acyl groups other than amino-acyl groups | 1.59523251984393 | bayes_pls_golite062009 |
| structural molecule activity | 1.47097979074281 | bayes_pls_golite062009 |
| transferase activity, transferring acyl groups | 1.46155402212921 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.41752877005447 | bayes_pls_golite062009 |
| platelet-activating factor acetyltransferase activity | 1.36229564654648 | bayes_pls_golite062009 |
| S-adenosylmethionine-dependent methyltransferase activity | 1.29381240188821 | bayes_pls_golite062009 |
| transporter activity | 1.21549336905926 | bayes_pls_golite062009 |
| receptor activity | 1.12819778129653 | bayes_pls_golite062009 |
| transcription factor activity | 1.08768505897883 | bayes_pls_golite062009 |
| mRNA binding | 1.05053985350578 | bayes_pls_golite062009 |
| microtubule plus-end binding | 1.01166033978052 | bayes_pls_golite062009 |
| myosin binding | 0.989691178611801 | bayes_pls_golite062009 |
| molecular transducer activity | 0.974380908248463 | bayes_pls_golite062009 |
| signal transducer activity | 0.974380908248463 | bayes_pls_golite062009 |
| protein transporter activity | 0.964340340346761 | bayes_pls_golite062009 |
| angiotensin receptor binding | 0.920323565472959 | bayes_pls_golite062009 |
| type 1 angiotensin receptor binding | 0.920323565472959 | bayes_pls_golite062009 |
| myosin heavy chain kinase activity | 0.848140419140051 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.734793983890004 | bayes_pls_golite062009 |
| dynein intermediate chain binding | 0.707581908546932 | bayes_pls_golite062009 |
| histone binding | 0.685319917508843 | bayes_pls_golite062009 |
| transcription factor binding | 0.489473003915035 | bayes_pls_golite062009 |
| insulin receptor binding | 0.43316396073854 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.426429095658617 | bayes_pls_golite062009 |
| kinase activity | 0.387572734234845 | bayes_pls_golite062009 |
| transcription initiation factor activity | 0.319410949467982 | bayes_pls_golite062009 |
| histone methyltransferase activity | 0.311523647180993 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.30761651528651 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.28606552120995 | bayes_pls_golite062009 |
| protein kinase activity | 0.229242350006544 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.226335610368636 | bayes_pls_golite062009 |
| telomerase activity | 0.18450996813475 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.161639372576406 | bayes_pls_golite062009 |
| myosin II binding | 0.12060669039328 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.118975415284669 | bayes_pls_golite062009 |
| receptor binding | 0.0390635451962911 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
