YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC521.02
Organism:	Schizosaccharomyces pombe
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC521.02.

Description	E-value	Query Range	Subject Range
gi\|42546370, gi\|... - gi\|46108370\|ref\|XP_381243.1\| hypothetical protein FG01067.1 [Gibberella zeae PH-1], gi\|42546370\|gb\|E...	304.0	[0..24]	[249..7]
gi\|85091985 - gi\|85091985\|ref\|XP_959170.1\| hypothetical protein NCU09226 [Neurospora crassa OR74A] gi\|28920571, gi\|... - gi\|32422349\|ref\|XP_331618.1\| hypothetical protein [Neurospora crassa], gi\|28920571\|gb\|EAA29934.1\| pr...	277.0	[0..24]	[249..7]
gi\|88185252, gi\|... - gi\|88185252\|gb\|EAQ92720.1\| hypothetical protein CHGG_00955 [Chaetomium globosum CBS 148.51], gi\|1161...	269.0	[0..24]	[249..7]
gi\|46099790, gi\|... - gi\|71019981\|ref\|XP_760221.1\| hypothetical protein UM04074.1 [Ustilago maydis 521], ref\|XP_401689.1\| ...	223.0	[0..23]	[199..4]
gi\|111059366 - gi\|111059366\|gb\|EAT80486.1\| hypothetical protein SNOG_12074 [Phaeosphaeria nodorum SN15]	199.0	[0..24]	[249..7]
gi\|110738098, gi... - gi\|42562774\|ref\|NP_564704.2\| zinc ion binding [Arabidopsis thaliana], gi\|119935912\|gb\|ABM06032.1\| At...	193.0	[0..34]	[246..11]
gi\|169766736 - gi\|169766736\|ref\|XP_001817839.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|220701039, gi... - gi\|238483501\|ref\|XP_002372989.1\| zinc metallopeptidase, putative [Aspergillus flavus NRRL3357], gi\|2... gi\|83765694 - gi\|83765694\|dbj\|BAE55837.1\| unnamed protein product [Aspergillus oryzae]	186.0	[0..44]	[227..18]
gi\|218201399 - gi\|218201399\|gb\|EEC83826.1\| hypothetical protein OsI_29769 [Oryza sativa Indica Group] gi\|113624129, gi... - gi\|50947329\|ref\|XP_483192.1\| zinc metalloproteinase-like [Oryza sativa (japonica cultivar-group)], g...	186.0	[0..44]	[212..154]
gi\|90304088, gi\|... - gi\|90304088\|gb\|EAS33719.1\| hypothetical protein CIMG_04743 [Coccidioides immitis RS], gi\|119189391\|r...	186.0	[0..43]	[232..17]

Back

Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAILYLYYI LTTSILLSVS FMLRINDDDH PNEKIGFISA IKGDFHDLSS DYLKRIAAMA  60
   61 FPIMKEHGFG VTSLDEVAYN AKFWGRNWNK GECIELVLRD ASNRWLPFEF VMDVFLHELC 120
  121 HIWQGPHDRR FFSHLSTLRA ALIALYAKGY K

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.05
Match:	1gkcA
Description:	Gelatinase B (MMP-9)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	1.54272760913249	bayes_pls_golite062009
binding	1.39614696313196	bayes_pls_golite062009
peptidase activity	1.29072769897217	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	1.08724880344119	bayes_pls_golite062009
catalytic activity	0.843772148375291	bayes_pls_golite062009
endopeptidase activity	0.459012819207862	bayes_pls_golite062009
protein binding	0.273409914175328	bayes_pls_golite062009
metallopeptidase activity	0.139798501880167	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [152-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPGKYMTWDS FVLANVVGNY NTVVFNGITL ERSTMHGVET CGGSLQRKKK IRRKPTPSST  60
   61 KKRKLTRTGQ KLGTDMNIRL ELLKSPAKPQ AQSMRGREAR IAAALLRVDN SNEYKPKDHN 120
  121 SSTTLENYFV VE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.314	d.120.1	Cytochrome b5
View	Download	0.349	a.74.1	Cyclin-like
View	Download	0.439	d.58.18	Regulatory domain in the aminoacid metabolism
View	Download	0.342	d.141.1	Ribosomal protein L6
View	Download	0.287	a.13.1	alpha-2-Macroglobulin receptor associated protein (RAP) domain 1

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: