| Protein: | sfp1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 442 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sfp1.
| Description | E-value | Query Range |
Subject Range |
|
|
344.0 | [0..40] | [442..2476] |
|
|
317.0 | [0..40] | [442..283] |
|
|
313.0 | [0..18] | [442..245] |
|
|
311.0 | [0..51] | [441..356] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MPSLALPINK PSHHNVNYNG NSFNSIHATS FGMSPQSWGN SFSGQAWLRD TIPSLSNVVE 60
61 SQTIPEEDST SYLNRLEEAF CRDFRCCGQT LEDLHQLIHH YEE
|
| Detection Method: |  |
| Confidence: | 1.0 |
| Match: | 2ct1A |
| Description: | Solution Structure of the zinc finger domain of Transcriptional repressor CTCF protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.47951889934838 | bayes_pls_golite062009 |
| nucleic acid binding | 4.35187767955595 | bayes_pls_golite062009 |
| DNA binding | 4.31051339571017 | bayes_pls_golite062009 |
| transcription factor activity | 3.28758716579796 | bayes_pls_golite062009 |
| binding | 2.99742524370422 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.05542379535543 | bayes_pls_golite062009 |
| transcription activator activity | 1.97757778483124 | bayes_pls_golite062009 |
| transcription repressor activity | 1.44763794968807 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.26862497534835 | bayes_pls_golite062009 |
| chromatin binding | 1.26688155139311 | bayes_pls_golite062009 |
| transcription factor binding | 1.23738346570539 | bayes_pls_golite062009 |
| protein binding | 0.952480850696098 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.77786753211873 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.776754909146767 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.627794176881836 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.356308409912021 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
|
Region A: Residues: [104-219] |
1 11 21 31 41 51
| | | | | |
1 QHAVLATDSA VPQEYSLDSN NAAQSNHSHI QALKQRERIR MHDLADQLGT SEISDNSAVL 60
61 PFAFPANGGA PGPYRVSVVV PAAAAAAAAA ASSDMSSDEA SSQAETTGTP KKMPES
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [220-442] |
1 11 21 31 41 51
| | | | | |
1 LVMDASSPLS DMSMSIDVGE SAANNVFAFN QKDMVDSTYL PPFNYDHDVF SFAPSVASAD 60
61 QFTESSMSPT PEVVSPAATN SAISSPFVRK SSSDLEAKPS KKQRSTPAFS HDSPLTIDYP 120
121 GSNLVVVDKP YKCPVPNCDK AYKNQNGLKY HKLHGHCSPI TTPTPAPIPH QGFVVENKPY 180
181 RCEVCSKRYK NLNGLKYHRT HSHLQVSMAQ AQREVQMNFM RTA
|
| Detection Method: | |
| Confidence: | 25.69897 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
