| Protein: | SPBC19F5.02c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 710 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC19F5.02c.
| Description | E-value | Query Range |
Subject Range |
|
|
620.0 | [0..6] | [666..1165] |
|
|
605.0 | [0..14] | [710..865] |
|
|
603.0 | [0..3] | [709..811] |
|
|
586.0 | [0..50] | [700..1028] |
|
|
585.0 | [0..6] | [703..838] |
|
Region A: Residues: [1-615] |
1 11 21 31 41 51
| | | | | |
1 MDIHRCRFID YTPSAITAMA FSHKSGQNDS MPNNLLLAVG RASGNIEIWN PRNDWCLKTV 60
61 LYGGVDRSIE GIVWSTGEEE LRLFSIGFST TITEWNLHTG KPLVNQDSNA GAIWSIAICD 120
121 ETKTLAVGCD DGSCVLFDIS GGPGVIEFKR VLMRQTSRIL SLDFQTKDHL VGGCADGVIK 180
181 VWDLSTPNSA IISRMQVDRA RKGEAALIWA VKSLRDGTIV SADSSGAVKF WNGKFFTLSQ 240
241 SFKLHLADAL CLGVSANGDM VFSSGIDRKT IQYSREGGKR EWVSNSFRRF HSHDVRCMAV 300
301 FECKSLDVLI SGGMDMMLAV IPVRQFNRKN HRMISAVPQR PRMAVAPKAR LFMLWNDHEV 360
361 LLWRIGSPGY RFLLKIVLAD EENISHAAIS PDGELIAISS VLRTKLYQLQ YSDENVKVET 420
421 VEDSFLSNIG ASLLSFTVDK NKLILVSNDS EIFLIELSRL DSRQLEVFEL SQPTSKKIAP 480
481 RQRSNVSSMC DGICSIAVSS DGDYFAVADT VGNIFCYSLS NLTYSELPRV NTYVRAMAFR 540
541 PDVRGRLAVA TAGNQVYEFD VQSRKLSEWS KNNSTNMPKE FSQLLDKAFG AFFDSKHPSR 600
601 FWIWSANWVS FFDLN
|
| Detection Method: |  |
| Confidence: | 64.221849 |
| Match: | 1nr0A |
| Description: | Actin interacting protein 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| snoRNA binding | 6.03079504484743 | bayes_pls_golite062009 |
| 3.41022148055944 | bayes_pls_golite062009 | |
| RNA binding | 3.0829625416797 | bayes_pls_golite062009 |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| transcription regulator activity | 2.3610959773142 | bayes_pls_golite062009 |
| nucleic acid binding | 2.30918780727915 | bayes_pls_golite062009 |
| protein binding | 2.26925404328312 | bayes_pls_golite062009 |
| DNA binding | 1.71685536470455 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.5283366007575 | bayes_pls_golite062009 |
| structural molecule activity | 1.31060431370834 | bayes_pls_golite062009 |
| transcription activator activity | 1.23969853550045 | bayes_pls_golite062009 |
| transcription factor activity | 1.08768505897883 | bayes_pls_golite062009 |
| actin binding | 0.794986868016276 | bayes_pls_golite062009 |
| transcription repressor activity | 0.658573452658359 | bayes_pls_golite062009 |
| transcription factor binding | 0.489473003915035 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.30761651528651 | bayes_pls_golite062009 |
| ligase activity | 0.280267687917718 | bayes_pls_golite062009 |
| tubulin binding | 0.194781260474147 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.182612389752591 | bayes_pls_golite062009 |
| microtubule binding | 0.167936232702449 | bayes_pls_golite062009 |
| mRNA binding | 0.0519838181830878 | bayes_pls_golite062009 |
|
Region A: Residues: [616-710] |
1 11 21 31 41 51
| | | | | |
1 LQLPAPRAAG KRKIEMNATV DGNLNDKKLA NANSNGISNY GTGDSRCFWI THKYRPMLLV 60
61 GSVGNSELLV VERPIADMLM SKSMPASFYE HKFGS
|
| Detection Method: | |
| Confidence: | 14.39794 |
| Match: | 1k32A |
| Description: | Tricorn protease; Tricorn protease N-terminal domain; Tricorn protease domain 2 |
Matching Structure (courtesy of the PDB): |
|
