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Protein Overview: SPBC19F5.02c

General Information:
Name(s) found: SPBC19F5.02c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • U3 snoRNP protein Utp4 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 710 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    spindle [IDALink to PubMed article]
    protein complex [RCALink to PubMed article]
    nucleolus [IEA]
    small nucleolar ribonucleoprotein complex [ISSLink to PubMed article]
    Biological Process: maturation of SSU-rRNA [ISSLink to PubMed article]
    Molecular Function: snoRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIHRCRFID YTPSAITAMA FSHKSGQNDS MPNNLLLAVG RASGNIEIWN PRNDWCLKTV  60
   61 LYGGVDRSIE GIVWSTGEEE LRLFSIGFST TITEWNLHTG KPLVNQDSNA GAIWSIAICD 120
  121 ETKTLAVGCD DGSCVLFDIS GGPGVIEFKR VLMRQTSRIL SLDFQTKDHL VGGCADGVIK 180
  181 VWDLSTPNSA IISRMQVDRA RKGEAALIWA VKSLRDGTIV SADSSGAVKF WNGKFFTLSQ 240
  241 SFKLHLADAL CLGVSANGDM VFSSGIDRKT IQYSREGGKR EWVSNSFRRF HSHDVRCMAV 300
  301 FECKSLDVLI SGGMDMMLAV IPVRQFNRKN HRMISAVPQR PRMAVAPKAR LFMLWNDHEV 360
  361 LLWRIGSPGY RFLLKIVLAD EENISHAAIS PDGELIAISS VLRTKLYQLQ YSDENVKVET 420
  421 VEDSFLSNIG ASLLSFTVDK NKLILVSNDS EIFLIELSRL DSRQLEVFEL SQPTSKKIAP 480
  481 RQRSNVSSMC DGICSIAVSS DGDYFAVADT VGNIFCYSLS NLTYSELPRV NTYVRAMAFR 540
  541 PDVRGRLAVA TAGNQVYEFD VQSRKLSEWS KNNSTNMPKE FSQLLDKAFG AFFDSKHPSR 600
  601 FWIWSANWVS FFDLNLQLPA PRAAGKRKIE MNATVDGNLN DKKLANANSN GISNYGTGDS 660
  661 RCFWITHKYR PMLLVGSVGN SELLVVERPI ADMLMSKSMP ASFYEHKFGS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..615] PSI-BLAST 64.221849 Actin interacting protein 1
    2 View Details [616..710] PSI-BLAST 14.39794 Tricorn protease; Tricorn protease N-terminal domain; Tricorn protease domain 2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • snoRNA binding
    		•  6.03079504484743 bayes_pls_golite062009
    		• 3.41022148055944 bayes_pls_golite062009
  • RNA binding
    		•  3.0829625416797 bayes_pls_golite062009
  • binding
    		•  2.42570478946173 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.3610959773142 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.30918780727915 bayes_pls_golite062009
  • protein binding
    		•  2.26925404328312 bayes_pls_golite062009
  • DNA binding
    		•  1.71685536470455 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.5283366007575 bayes_pls_golite062009
  • structural molecule activity
    		•  1.31060431370834 bayes_pls_golite062009
  • transcription activator activity
    		•  1.23969853550045 bayes_pls_golite062009
  • transcription factor activity
    		•  1.08768505897883 bayes_pls_golite062009
  • actin binding
    		•  0.794986868016276 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.658573452658359 bayes_pls_golite062009
  • transcription factor binding
    		•  0.489473003915035 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.30761651528651 bayes_pls_golite062009
  • ligase activity
    		•  0.280267687917718 bayes_pls_golite062009
  • tubulin binding
    		•  0.194781260474147 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.182612389752591 bayes_pls_golite062009
  • microtubule binding
    		•  0.167936232702449 bayes_pls_golite062009
  • mRNA binding
    		•  0.0519838181830878 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle