| Protein: | snf21 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1199 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for snf21.
| Description | E-value | Query Range |
Subject Range |
|
|
585.0 | [0..23] | [1195..653] |
|
|
581.0 | [0..21] | [1173..306] |
|
|
580.0 | [0..21] | [1173..333] |
|
Region A: Residues: [1-273] |
1 11 21 31 41 51
| | | | | |
1 MRAEKQYTRN EVEETIVRWK KLKESGATEH DNTEYAQLCD VLRSAQSEIE ARRDLKGHIK 60
61 RCFSSVDKNT EKLILKQQVL AYKKLSQNLP APDDCILSVL LRLSKDEQLL QSIVKQPLQN 120
121 SKVDGKVRRD FGSCQITPSA KQQRKYLQYQ ISEDDAIKNR MFRRMSDLES YPAVMRDVAE 180
181 LKDDNERLNL DTIKRNALVE LKKLRLIKQQ ESLRHQVMHC QPHLRTIVNA VERMSCRRPK 240
241 LVPQATRLTE VLERQQRSDR ERRLKQKQCD YLQ
|
| Detection Method: |  |
| Confidence: | 12.30103 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [274-364] |
1 11 21 31 41 51
| | | | | |
1 TVCAHGREIN VRTKNAQARA QKANRAVLAY HSHIEKEEQR RAERNAKQRL QALKENDEEA 60
61 YLKLIDQAKD TRITHLLRQT DHYLDSLAAA V
|
| Detection Method: | |
| Confidence: | 11.744727 |
| Match: | PF07529.4 |
| Description: | No description for PF07529.4 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.970 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
|
Region A: Residues: [365-922] |
1 11 21 31 41 51
| | | | | |
1 KVQQSQFGES AYDEDMDRRM NPEDDRKIDY YNVAHNIREV VTEQPSILVG GKLKEYQLRG 60
61 LQWMISLYNN HLNGILADEM GLGKTIQTIS LITHLIEKKR QNGPFLVIVP LSTLTNWTME 120
121 FERWAPSIVK IVYKGPPQVR KALHPQVRHS NFQVLLTTYE YIIKDRPLLS RIKWIYMIID 180
181 EGHRMKNTQS KLTNTLTTYY SSRYRLILTG TPLQNNLPEL WALLNFVLPR IFNSIKSFDE 240
241 WFNTPFANTG GQDKMELTEE ESLLVIRRLH KVLRPFLLRR LKKDVEAELP DKVEKVIRCQ 300
301 MSGLQQKLYY QMKKHGMLYV EDAKRGKTGI KGLQNTVMQL KKICNHPFVF EDVERSIDPT 360
361 GFNYDMLWRV SGKFELLDRI LPKLFRSGHR ILMFFQMTQI MNIMEDYLHY RQWRYLRLDG 420
421 STKADDRSKL LGVFNDPTAE VNLFLLSTRA GGLGLNLQTA DTVIIFDSDW NPHQDLQAQD 480
481 RAHRIGQTKE VRIYRLITEK SVEENILARA QYKLDIDGKV IQAGKFDNKS TPEEREAFLR 540
541 SLLENENGEE ENDEKGEL
|
| Detection Method: | |
| Confidence: | 88.154902 |
| Match: | 1z3iX |
| Description: | Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.16853848306485 | bayes_pls_golite062009 |
| nucleic acid binding | 2.09956015274464 | bayes_pls_golite062009 |
| transcription regulator activity | 2.09345198747025 | bayes_pls_golite062009 |
| DNA binding | 1.87765278833074 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.23094623498843 | bayes_pls_golite062009 |
| motor activity | 1.14667913749579 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.07968294254548 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 1.05990253628867 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 1.05990253628867 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| DNA helicase activity | 0.75415390146713 | bayes_pls_golite062009 |
| transcription factor activity | 0.682439846757997 | bayes_pls_golite062009 |
| helicase activity | 0.6191010101321 | bayes_pls_golite062009 |
| microtubule motor activity | 0.60036517876321 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.500462538667228 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.41398614759796 | bayes_pls_golite062009 |
| protein binding | 0.378225828131122 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.29664013896754 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.29664013896754 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.243902356228423 | bayes_pls_golite062009 |
| RNA helicase activity | 0.18426050934025 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.147579541298736 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 0.14606996093053 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.133017653323467 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 0.13050483816765 | bayes_pls_golite062009 |
| nucleotide binding | 0.114848452385726 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.113504049290503 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.111293884322157 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.10713474095071 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.0916519414118148 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.0915913646217636 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.089234257580272 | bayes_pls_golite062009 |
| actin binding | 0.00482938540552702 | bayes_pls_golite062009 |
|
Region A: Residues: [923-1199] |
1 11 21 31 41 51
| | | | | |
1 DDDELNEILA RGDDELRLFK QMTEDLERES PYGKNKEKER LIQVSELPEF YQREEPEKTT 60
61 DLLQEEPLGR GARRRTPVVY DEAVRDAQWM AEMDMESEAR PTRGRPKRNI ASVDETPALT 120
121 LNGKPKKKRG PAPDTLTSEH RSLLRRVCLE IYKAVNELED DNGRPLNKLF LELPSKKLYP 180
181 DYYMIIKSPI ALDAIRKHIN GTFYKTLEAM KSDLMTMFNN ARTYNEEGSF VYEDANKMQT 240
241 AMETKIEELE EDGTLATLRG MEAEATSQLE DRIENEA
|
| Detection Method: | |
| Confidence: | 20.69897 |
| Match: | 1eqfA |
| Description: | TAFII250 double bromodomain module |
Matching Structure (courtesy of the PDB): |
|
