| Protein: | rmt3 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 543 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rmt3.
| Description | E-value | Query Range |
Subject Range |
|
|
367.0 | [0..34] | [542..20] |
|
|
366.0 | [0..34] | [542..20] |
|
|
356.0 | [0..32] | [542..21] |
|
|
346.0 | [0..32] | [536..13] |
|
|
343.0 | [0..28] | [542..6] |
|
|
339.0 | [0..33] | [542..22] |
|
|
331.0 | [0..42] | [542..27] |
|
Region A: Residues: [1-144] |
1 11 21 31 41 51
| | | | | |
1 MLVKPMACYF EIWTRKVTTI EDFSLAIANR FKQMGSHSDS EVDWDNEEEV WEDEVHEFCC 60
61 LFCDSTFTCL KDLWSHCKEA HNFDFYQVKQ QNNLDFYACI KLVNYIRSQV KEGKTPDLDK 120
121 LSDILRSDEY MISVLPDDSV LFSL
|
| Detection Method: |  |
| Confidence: | 17.69897 |
| Match: | 1wirA |
| Description: | Solution structure of the C2H2 zinc finger domain of the protein arginine N-methyltransferase 3 from Mus musculus |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.31369346002275 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| chromatin binding | 1.53640935908107 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.42446448463712 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
| receptor activity | 1.18834908971961 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.1674904189309 | bayes_pls_golite062009 |
| signal transducer activity | 1.12277938241964 | bayes_pls_golite062009 |
| molecular transducer activity | 1.12277938241964 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.0497955246512 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| RNA binding | 0.938541269618281 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| histone binding | 0.687710658383448 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.311339098303136 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [145-209] |
1 11 21 31 41 51
| | | | | |
1 GDELDSDFED DNTLEIEVEN PADVSKDAEI KKLKLQNQLL ISQLEEIRKD KMNELTSQTT 60
61 DQLSV
|
| Detection Method: | |
| Confidence: | 19.0 |
| Match: | 2as0A |
| Description: | Crystal Structure of PH1915 (APC 5817): A Hypothetical RNA Methyltransferase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [210-543] |
1 11 21 31 41 51
| | | | | |
1 TPKKADNDSY YFESYAGNDI HFLMLNDSVR TEGYRDFVYH NKHIFAGKTV LDVGCGTGIL 60
61 SMFCAKAGAK KVYAVDNSDI IQMAISNAFE NGLADQITFI RGKIEDISLP VGKVDIIISE 120
121 WMGYALTFES MIDSVLVARD RFLAPSGIMA PSETRLVLTA TTNTELLEEP IDFWSDVYGF 180
181 KMNGMKDASY KGVSVQVVPQ TYVNAKPVVF ARFNMHTCKV QDVSFTSPFS LIIDNEGPLC 240
241 AFTLWFDTYF TTKRTQPIPE AIDEACGFTT GPQGTPTHWK QCVLLLRNRP FLQKGTRVEG 300
301 TISFSKNKKN NRDLDISVHW NVNGKADSQS YVLN
|
| Detection Method: | |
| Confidence: | 77.0 |
| Match: | 1orhA |
| Description: | Structure of the Predominant Protein Arginine Methyltransferase PRMT1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| arginine N-methyltransferase activity | 5.52520020727046 | bayes_pls_golite062009 |
| protein-arginine N-methyltransferase activity | 5.52520020727046 | bayes_pls_golite062009 |
| protein methyltransferase activity | 5.03267617653315 | bayes_pls_golite062009 |
| S-adenosylmethionine-dependent methyltransferase activity | 4.4632173842967 | bayes_pls_golite062009 |
| histone methyltransferase activity (H4-R3 specific) | 4.42061797259061 | bayes_pls_golite062009 |
| histone methyltransferase activity | 4.40911163698179 | bayes_pls_golite062009 |
| protein-arginine omega-N monomethyltransferase activity | 4.39379274790202 | bayes_pls_golite062009 |
| methyltransferase activity | 4.15445027778357 | bayes_pls_golite062009 |
| N-methyltransferase activity | 4.07806017452628 | bayes_pls_golite062009 |
| transferase activity, transferring one-carbon groups | 4.07153733729662 | bayes_pls_golite062009 |
| protein-arginine omega-N asymmetric methyltransferase activity | 3.55785970363721 | bayes_pls_golite062009 |
| protein-arginine omega-N symmetric methyltransferase activity | 3.42560739702664 | bayes_pls_golite062009 |
| transferase activity | 2.926540904444 | bayes_pls_golite062009 |
| histone-arginine N-methyltransferase activity | 2.86617323549909 | bayes_pls_golite062009 |
| DNA-methyltransferase activity | 2.43145108778901 | bayes_pls_golite062009 |
| histone methyltransferase activity (H2A-R3 specific) | 2.26179395735928 | bayes_pls_golite062009 |
| histone methyltransferase activity (H3-R2 specific) | 2.26179395735928 | bayes_pls_golite062009 |
| [myelin basic protein]-arginine N-methyltransferase activity | 2.10091845446893 | bayes_pls_golite062009 |
| transcription regulator activity | 2.0187748912503 | bayes_pls_golite062009 |
| rRNA methyltransferase activity | 1.93505048403302 | bayes_pls_golite062009 |
| DNA binding | 1.86585662505513 | bayes_pls_golite062009 |
| nucleic acid binding | 1.71901340148111 | bayes_pls_golite062009 |
| catalytic activity | 1.25333584501255 | bayes_pls_golite062009 |
| molecular transducer activity | 1.11388181877851 | bayes_pls_golite062009 |
| signal transducer activity | 1.11388181877851 | bayes_pls_golite062009 |
| binding | 0.976078016260105 | bayes_pls_golite062009 |
| histone binding | 0.964746527369069 | bayes_pls_golite062009 |
| histone-lysine N-methyltransferase activity | 0.858129308056814 | bayes_pls_golite062009 |
| protein-lysine N-methyltransferase activity | 0.858129308056814 | bayes_pls_golite062009 |
| lysine N-methyltransferase activity | 0.858129308056814 | bayes_pls_golite062009 |
| RNA methyltransferase activity | 0.817509452491588 | bayes_pls_golite062009 |
| site-specific DNA-methyltransferase (adenine-specific) activity | 0.703178429468566 | bayes_pls_golite062009 |
| RNA binding | 0.460713129603544 | bayes_pls_golite062009 |
| rRNA (adenine) methyltransferase activity | 0.229189844833659 | bayes_pls_golite062009 |
| rRNA (adenine-N6,N6-)-dimethyltransferase activity | 0.152064081957651 | bayes_pls_golite062009 |
