| Protein: | rgf3 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1275 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rgf3.
| Description | E-value | Query Range |
Subject Range |
|
|
580.0 | [0..2] | [1267..49] |
|
|
567.0 | [0..11] | [1266..33] |
|
|
563.0 | [0..1] | [1268..61] |
|
|
561.0 | [0..3] | [1267..44] |
|
|
555.0 | [0..7] | [1266..32] |
|
|
547.0 | [0..28] | [1248..130] |
|
|
538.0 | [0..11] | [1268..123] |
|
|
535.0 | [0..19] | [1253..421] |
|
Region A: Residues: [1-374] |
1 11 21 31 41 51
| | | | | |
1 MKLSNELFHR SSKDHGGKSR ICLDSSEDTY PPHSSSPPSF QKRLSFSDFS TTRLFSPPFL 60
61 SKRSNNSPHR FSYSPPQHPA SINSRRVASY TVQSSPSRTT YRQLPNEPQN SAAYTTYSSF 120
121 PNALFDDFSP NNPLDTDPFL TSPGNKQNTV DSFRPLPETP VSPGGSLVHP LPRPPLPSSV 180
181 SSHSSPYSTT SSTSLYSLYN DISLSCSPEP YLPLSPTRSP ARTPSPIRLY SSDALRPQSP 240
241 LSPSVEYLTP PNPYSLKSDI SSTRQLPKIP VQDYASGKIS SPLITRTHRR AQSETLFSSC 300
301 REPWLVGKLY KWCKEEVFTA LGGLVHEGVS RREVAQVMAT LFTIHIASME FLIAEIIAKN 360
361 ILGDWINYGL VEVI
|
| Detection Method: |  |
| Confidence: | 5.69897 |
| Match: | 1y0fA |
| Description: | No description for 1y0fA was found. |
|
Region A: Residues: [375-462] |
1 11 21 31 41 51
| | | | | |
1 NLEKLQIAFT SNEPPSGSGV LPFLTNGGCY SYICRSRSCP SKYQCYSCRC ARNSSLEFTS 60
61 LPGQSSDTWS IFWNISSLNS LPSSLSKR
|
| Detection Method: | |
| Confidence: | 87.154902 |
| Match: | 2pz1A |
| Description: | No description for 2pz1A was found. |
|
Region A: Residues: [463-987] |
1 11 21 31 41 51
| | | | | |
1 EIARQNNIHE LICKESDYVA DLNTLAELFR DGIVQQQDAI VPSNRVADFI QSVFGNVESI 60
61 RQLHSRLFLP QLIMRERLQG PVVSIIGDIL LEWIHAAKSS YINYAKQFPL ADETYKLECQ 120
121 RNTYFARWLA ACRSDPRCRR LDFQHFLQRP TQRLQRYTLE LDTILKHTEQ SSWDFQLITQ 180
181 AVKELRATCE ECDAVIATVL EANRIRDLSY QLLFKNHESV NLELRDPERE FFFEGIVQRR 240
241 SDSRLDWLDI HLFLLDNYLI MAKARKDKRT NASRYVVSKR PIPLDLLVLS PKMDDFQLKS 300
301 NTNKFLGSLA GNLPQESLTT KSKRKSKVNL ELMFDATAEK NNENSMNSAV FEKSQLYPFT 360
361 IRHLGAYTAS YTLYVESLQL RKLWVEKINV AKKRHSQKIN IKNPFALKVV SDVAFQYPPS 420
421 DLVNGNEPLN SFNEITLVEG SSIDRALNEV AWKHPIVSEE LLPEPIAYGD ISCIAQFNDY 480
481 EGHVSVLIAT STGIFLGAFG DSSDIRDWKK ISSQRRVTQL GVVEE
|
| Detection Method: | |
| Confidence: | 28.69897 |
| Match: | 1xdvA |
| Description: | Experimentally Phased Structure of Human the Son of Sevenless protein at 4.1 Ang. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.65091781683225 | bayes_pls_golite062009 |
| protein binding | 2.12168271674167 | bayes_pls_golite062009 |
| GTPase regulator activity | 1.66986263418539 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 1.64990514605397 | bayes_pls_golite062009 |
| Rho guanyl-nucleotide exchange factor activity | 1.31154393866945 | bayes_pls_golite062009 |
| small GTPase regulator activity | 1.2550809703725 | bayes_pls_golite062009 |
| enzyme regulator activity | 1.25381967078645 | bayes_pls_golite062009 |
| small GTPase binding | 0.8507658747425 | bayes_pls_golite062009 |
| GTPase binding | 0.82889812790119 | bayes_pls_golite062009 |
| guanyl-nucleotide exchange factor activity | 0.745321902095093 | bayes_pls_golite062009 |
| transcription regulator activity | 0.66119387669652 | bayes_pls_golite062009 |
| nucleic acid binding | 0.593146992671847 | bayes_pls_golite062009 |
| DNA binding | 0.48667544658785 | bayes_pls_golite062009 |
|
Region A: Residues: [988-1128] |
1 11 21 31 41 51
| | | | | |
1 FDILLELRDK TLYAHKLSRI IEMGLIESKI AVVIGTPHAV SFFKIGKLSE GASVKRERTL 60
61 VFYKEGLGNT TTIICCEPVI GLGHNYQKTY AFKRKDVTSF RTLDDFHVTA NCHSIDCFKY 120
121 SIALCHNKGI DVLRLDPKLA V
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1129-1275] |
1 11 21 31 41 51
| | | | | |
1 GFPSPSVLND TLFRNRINNS KPLGVFRIHD PSLFACCYQF GAVFVNGEGS MVNKECWFDW 60
61 IGKPNSVTSC HGYLIAFNDE FVEIWNTRTR KLNQIIQGND IKYYPSNSDW LANGKYIMFG 120
121 MVHPQYHDRH LILALNKAKT NSFIIED
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
