YRC Public Data Repository - Protein Structure Prediction

Protein:	rdl1
Organism:	Schizosaccharomyces pombe
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rdl1.

Description	E-value	Query Range	Subject Range
gi\|395377 - gi\|395377\|emb\|CAA80878.1\| RecA-like protein [Schizosaccharomyces pombe]	205.0	[0..2]	[201..135]
rhp51 - recombinase Rhp51 gi\|19114794 - gi\|19114794\|ref\|NP_593882.1\| hypothetical protein SPAC644.14c [Schizosaccharomyces pombe 972h-]	204.0	[0..2]	[201..142]
gi\|40742735, gi\|... - gi\|67904210\|ref\|XP_682361.1\| hypothetical protein AN9092.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	204.0	[0..3]	[230..117]
gi\|224288621 - gi\|224288621\|ref\|ZP_03648805.1\| recombinase A [Bifidobacterium longum subsp. infantis CCUG 52486] gi\|227211909, gi... - gi\|227547654\|ref\|ZP_03977703.1\| recombination protein A [Bifidobacterium longum subsp. infantis ATCC... gi\|189427582, gi... - gi\|46191337\|ref\|ZP_00206783.1\| COG0468: RecA/RadA recombinase [Bifidobacterium longum DJO10A], gi\|18...	204.0	[0..2]	[213..97]
RECA_BIFLO - Protein RecA OS=Bifidobacterium longum GN=recA PE=3 SV=1 RECA_BIFLO - Protein RecA OS=Bifidobacterium longum (strain NCC 2705) GN=recA PE=3 SV=1 gi\|239621261, gi... - gi\|239621261\|ref\|ZP_04664292.1\| protein recA [Bifidobacterium longum subsp. infantis CCUG 52486], gi...	203.0	[0..2]	[213..76]
RECA_BIFBR - Protein RecA OS=Bifidobacterium breve GN=recA PE=3 SV=1	202.0	[0..2]	[213..76]
gi\|50309711, gi\|... - gi\|50309711\|ref\|XP_454867.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644002\|emb\|CAG9995... gi\|49644002 - gi\|49644002\|emb\|CAG99954.1\| KLLA0E20241p [Kluyveromyces lactis]	201.0	[0..2]	[201..147]
gi\|76874557, gi\|... - gi\|77359646\|ref\|YP_339221.1\| RecA protein (recombinase A) [Pseudoalteromonas haloplanktis TAC125], g...	201.0	[0..1]	[201..57]
gi\|37931470 - gi\|37931470\|gb\|AAP13463.1\| Rad51p [Kluyveromyces lactis]	200.0	[0..2]	[201..147]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQVTQFSGN SANLMLYWIL KSYYSRFDRI MWIDTLGTFN PAALPLPCLE KTMLVRSFDA  60
   61 QGLKDAVDEL ESNLKSSEDQ AYALCIDSFS NPIGLLMAQG NISFAHAFMM TLGRKCRILT 120
  121 RKFRLAVYLS TSLVYIKQLH LSKPALGNSW PFCLDHSYIL EDQQHNKCLV HCNQSRKDLL 180
  181 GCSQLFLLLK GSFTHEYLTI DFYNGTPVSV SSKLHVSPSL YHSSTLNSPS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.39794
Match:	1v5wA
Description:	Crystal structure of the human Dmc1 protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.05253348982328	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.5002869400376	bayes_pls_golite062009
pyrophosphatase activity	1.49611313354225	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.47468810672455	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.47371190790284	bayes_pls_golite062009
hydrolase activity	1.29419296935491	bayes_pls_golite062009
DNA-dependent ATPase activity	1.2155186842031	bayes_pls_golite062009
helicase activity	1.16085745407703	bayes_pls_golite062009
nucleic acid binding	1.08697924060619	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
ATPase activity	0.844502974582959	bayes_pls_golite062009
DNA helicase activity	0.72881469450553	bayes_pls_golite062009
structure-specific DNA binding	0.720649395550746	bayes_pls_golite062009
DNA binding	0.702147676354075	bayes_pls_golite062009
ATP-dependent helicase activity	0.59513742813869	bayes_pls_golite062009
purine NTP-dependent helicase activity	0.59513742813869	bayes_pls_golite062009
double-stranded DNA binding	0.58862275163252	bayes_pls_golite062009
transcription regulator activity	0.287777990975748	bayes_pls_golite062009
ATP-dependent DNA helicase activity	0.22150712609541	bayes_pls_golite062009
nucleotide binding	0.114848452385726	bayes_pls_golite062009
purine nucleotide binding	0.10713474095071	bayes_pls_golite062009
purine ribonucleotide binding	0.0916519414118148	bayes_pls_golite062009
ribonucleotide binding	0.0915913646217636	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: