| Protein: | phx1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 942 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for phx1.
| Description | E-value | Query Range |
Subject Range |
|
|
354.0 | [0..413] | [846..166] |
|
|
341.0 | [0..408] | [846..188] |
|
|
335.0 | [0..416] | [846..187] |
|
|
333.0 | [0..417] | [846..178] |
|
|
332.0 | [0..421] | [823..173] |
|
|
322.0 | [0..415] | [844..66] |
|
|
319.0 | [0..415] | [844..60] |
|
|
281.0 | [0..415] | [888..229] |
|
|
260.0 | [0..415] | [861..158] |
|
|
252.0 | [0..415] | [851..157] |
|
Region A: Residues: [1-139] |
1 11 21 31 41 51
| | | | | |
1 MRSYSNPENG GQINDNINYS EKRPTMLPEN LSLSNYDMDS FLGQFPSDNN MQLPHSTYEQ 60
61 HLQGEQQNPT NPNYFPPEFD ENKVDWKQEK PKPDAPSFAD NNSFDNVNSS KLTNPSPVQP 120
121 NIVKSESEPA NSKQNEVVE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [140-237] |
1 11 21 31 41 51
| | | | | |
1 ATSVEKAKEN VAHESGTPES GGSTSAPKSK KQRLTADQLA YLLREFSKDT NPPPAIREKI 60
61 GRELNIPERS VTIWFQNRRA KSKLISRRQE EERQRILR
|
| Detection Method: | |
| Confidence: | 18.0 |
| Match: | 1b72A |
| Description: | Homeobox protein hox-b1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.26183812259792 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.14886080629275 | bayes_pls_golite062009 |
| chromatin binding | 1.04132983826241 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
|
Region A: Residues: [238-429] |
1 11 21 31 41 51
| | | | | |
1 EQRELDSLNQ KVSQAFAHEV LSTSPTSPYV GGIAANRQYA NTLLPKPTRK TGNFYMKSGP 60
61 MQSSMEPCIA ESDIPIRQSL SSTYYNSLSP NAVPVSSQRK YSASSYSAIP NAMSVSNQAF 120
121 DVESPPSSYA TPLTGIRMPQ PESDLYSYPR EVSPSSGGYR MFGHSKPSSY KASGPVRPPN 180
181 MATGHMRTSS EP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [430-603] |
1 11 21 31 41 51
| | | | | |
1 TSYDSEFYYF SCTLLVIGLW KRLRASPQDL MCFYSPPKKL FAYLIQFQGI QYRIEYSFFV 60
61 IESIHVFRVE EPLLNELSAT ASSRDKPAPN EYWLQMDIQL SVPPVFHMIT SEGQGNCTDF 120
121 TEGNQASEVL LHSLMGRATS MFQMLDRVRR ASPELGSVIR LQKGLNPHQF LDPQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [604-847] |
1 11 21 31 41 51
| | | | | |
1 WANQLPRQPD SSVFDHQGRN PPIQGLSHDT SSEYGNKSQF KRLRSTSTPA RQDLAQHLLP 60
61 PKTNTEGLMH AQSVSPITQA MKSANVLEGS STRLNSYEPS VSSAYPHHNL ALNLDNTQFG 120
121 ELGTSNISYP LSAPSDVGSL PRASNSPSRP VMHPNTQGIN TEIKDMAAQF PNSQTGGLTP 180
181 NSWSMNTNVS VPFTTQNREF GGIGSSSIST TMNAPSQQLS QVPFGDVSLA TENSVPSYGF 240
241 EVPS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [848-942] |
1 11 21 31 41 51
| | | | | |
1 EESVYAQART NSSVSAGVAP RLFIQTPSIP LASSAGQDSN LIEKSSSGGV YASQPGASGY 60
61 LSHDQSGSPF EDVYSPSAGI DFQKLRGQQF SPDMQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
