| Protein: | SPBC106.12c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 274 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC106.12c.
| Description | E-value | Query Range |
Subject Range |
|
|
180.0 | [0..3] | [253..106] |
|
|
179.0 | [0..3] | [253..106] |
|
Region A: Residues: [1-173] |
1 11 21 31 41 51
| | | | | |
1 MSLEKSLDEI INERTNGFDH KHSRRRGSQN RISKKSRLTY KFKRASKEHN SSPDDGPWQH 60
61 DLDQEQDAHP RTTHLQKRQH SENRFGVRVE NLHYQVLEKD VLSLFENFHP IRVIMNYDRA 120
121 GRSEGSCDVY FETSQDAEDA QKTLQSTNLK GSEIQISKKS PPSLFDRISD MPH
|
| Detection Method: |  |
| Confidence: | 33.09691 |
| Match: | 1po6A |
| Description: | Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.15097136329571 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| mRNA binding | 4.05281507540116 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| 3.4479220904723 | bayes_pls_golite062009 | |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 1.36691748240059 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 0.961194066054671 | bayes_pls_golite062009 |
| snRNA binding | 0.73428616955527 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.632534695085793 | bayes_pls_golite062009 |
| transporter activity | 0.628672636801176 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| hydrolase activity | 0.520121701073354 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.505106991526286 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.440554367505651 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| structural molecule activity | 0.187199936070111 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.182749906784328 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.096231856558874 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.059732432409948 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.0510390778764699 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.0484248928275733 | bayes_pls_golite062009 |
|
Region A: Residues: [174-274] |
1 11 21 31 41 51
| | | | | |
1 SARKPSRSSR SNRGFNRSSK KDDRSFRSSS KKSSNNSISH EDLDKELDEY AMSFHAASTV 60
61 SSHSSQDFTP SIANAHEKNE PVAPSKDSNL TEEMDLQMEA V
|
| Detection Method: | |
| Confidence: | 13.0 |
| Match: | 1qm9A |
| Description: | Polypyrimidine tract-binding protein |
Matching Structure (courtesy of the PDB): |
|
