| Protein: | srs2 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 887 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for srs2.
| Description | E-value | Query Range |
Subject Range |
|
|
522.0 | [0..5] | [739..6] |
|
|
522.0 | [0..2] | [739..1] |
|
|
522.0 | [0..2] | [739..1] |
|
|
520.0 | [0..2] | [739..1] |
|
|
519.0 | [0..2] | [738..1] |
|
|
518.0 | [0..2] | [739..1] |
|
|
517.0 | [0..2] | [739..1] |
|
|
514.0 | [0..1] | [738..1] |
|
|
514.0 | [0..2] | [739..19] |
|
|
513.0 | [0..2] | [739..19] |
|
Region A: Residues: [1-79] |
1 11 21 31 41 51
| | | | | |
1 METKSSYLKF LNEEQRISVQ SPHKYTQILA GPGSGKTRVL TARVAYLLQK NHIAAEDLII 60
61 ATFTNKAANE IKLRIEAIL
|
| Detection Method: |  |
| Confidence: | 145.0 |
| Match: | 1pjrA |
| Description: | STRUCTURE OF DNA HELICASE |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [80-887] |
1 11 21 31 41 51
| | | | | |
1 GNSEASKLIS GTFHSIAYKY LVKYGKHIGL SSNWLIADRN DTQAIMKRLL DSLKKAKNPI 60
61 ASGIRGQELT PQNALNRITK LKSNGLLVKP GMDQLSLING LEEPPKELQS HQSVELYRLY 120
121 QTSLWKNNLA DFDDLLLNFI LLLQKQPDCV RNIKHILIDE FQDTSKIQYF LVKLLALQNS 180
181 DITIVGDPDQ SIYGFRSAEI RNLNQMSEDF EGTQVLHLER NYRSAKPILE LALSIISQDK 240
241 SRPKKGLKSN HISSLKPHYR LFETNNKESY WIAREIKRIV GSCPELIFYN DIAILVRSSS 300
301 LTRSLEHALS ELGVPYRMVG VNKFFDREEI RDLIAYLRVL ANKDSTSLIR VINVPPRNIG 360
361 KTKIDRIIFE SERRGLTFWQ TLNEVKNENI LLSQRNDKSF LKSLKSFLCS ISKLENRYLS 420
421 NGHSATLSDL LLGILSEIKY YEYLVRKNKE TVEEKWENVM ELVQQSDNIS CIFYELDYKI 480
481 STIVLLQNFL TQIALVNEEQ KEGESQKVTI STLHAAKGLE WPVVFLPCLC ENIIPHSRSD 540
541 DLDEERRLLY VGATRAQALL YLSSFKSVTG MFADMQNSDN VQDVSPFLKG EEMKRWVMES 600
601 EIVFNEKIAS EIGTILGRKS YGKITNLSGI GSNANHNGTK FENLGFQCCR VLAEAELKKR 660
661 ERVKSVNDYN KDETNFRKHN AKRSKTDIRS WFEKKQPIDS DVEISEPSRS ASIMVANKDL 720
721 NDRSFETVNR IVSTRASTTN ASFMSSVRQN LGRGPSTKDQ VINRTLREGH QDVVQHTDLN 780
781 QSNTKVASAR PAGSRKRLGV RLRVSRML
|
| Detection Method: | |
| Confidence: | 42.0 |
| Match: | 1w36B |
| Description: | RecBCD:DNA complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| pyrophosphatase activity | 2.53588566650824 | bayes_pls_golite062009 |
| binding | 2.05253348982328 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 1.54436515966471 | bayes_pls_golite062009 |
| DNA clamp loader activity | 1.51134988628578 | bayes_pls_golite062009 |
| nucleic acid binding | 1.49633029954726 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.2155186842031 | bayes_pls_golite062009 |
| helicase activity | 1.16085745407703 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| DNA binding | 0.967303417236485 | bayes_pls_golite062009 |
| transcription regulator activity | 0.748437190903548 | bayes_pls_golite062009 |
| DNA helicase activity | 0.72881469450553 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.720649395550746 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.59513742813869 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.59513742813869 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.58862275163252 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.554103179498056 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.514720057139153 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.514459558493013 | bayes_pls_golite062009 |
| microtubule motor activity | 0.489468237062011 | bayes_pls_golite062009 |
| bubble DNA binding | 0.223451465608504 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.22150712609541 | bayes_pls_golite062009 |
| nucleotide binding | 0.114848452385726 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.10713474095071 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.0916519414118148 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.0915913646217636 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.089234257580272 | bayes_pls_golite062009 |
| DNA polymerase activity | 4.95561462330096E-4 | bayes_pls_golite062009 |
