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View Structure Prediction Details

Protein: qcr2
Organism: Schizosaccharomyces pombe
Length: 426 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for qcr2.

Description E-value Query
Range
Subject
Range
gi|73981963 - gi|73981963|ref|XP_533104.2| PREDICTED: similar to Mitochondrial processing peptidase beta subunit, ...
379.0 [0..12] [426..72]
MPPB_BOVIN - Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1
377.0 [0..2] [426..43]
gi|74151629 - gi|74151629|dbj|BAE41163.1| unnamed protein product [Mus musculus]
370.0 [0..2] [426..20]
MPPB_PONPY - Mitochondrial-processing peptidase subunit beta, mitochondrial precursor - Pongo pygmaeus (Orangutan...
MPPB_PONAB - Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1
370.0 [0..12] [426..48]
gi|114615264 - gi|114615264|ref|XP_001160333.1| PREDICTED: mitochondrial processing peptidase beta subunit isoform ...
370.0 [0..12] [426..48]
PMPCB - peptidase (mitochondrial processing) beta
368.0 [0..12] [426..48]
gi|397699 - gi|397699|dbj|BAA03007.1| mitochondrial processing protease [Rattus norvegicus]
368.0 [0..2] [426..40]
gi|148230160, gi... - gi|47939684|gb|AAH72067.1| MGC78954 protein [Xenopus laevis], gi|148230160|ref|NP_001085137.1| hypot...
368.0 [0..3] [426..32]

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Predicted Domain #1
Region A:
Residues: [1-426]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSFTRNLRR FQTPRRNLHG ISYTPKKVEG VSFAGRETPT ATGSLSVVIN AGSRYQPDAG  60
   61 VSHLLEKFAF KTTEERSALR ITRESELLGG QLSTQITREH IILTARFLNE YLEYYARLLA 120
  121 EVVDATKFLP FQLTEEVLPT ARIESELFRE DILRVAMAKL HEKAFHRGIG NEVYLPASAS 180
  181 PSISEIKDFA SKAYVKSNFS VISSGPDVQK ASDLCAKYFA VIPDGSPLKS APTKISSGES 240
  241 RVYSKGTNYF CLGFPAPAAS PELFVLSSIL GGDAAVKWSH GNTLLAKAAG TASEYKATAV 300
  301 ADLTPYSDAS LLSVVISGSC PKAIKATASE SFKALKSLSS NIPNDVVKSG IAMAKTKYLS 360
  361 AFEPVTLNAI SASSLVSASK GSDAFISGFD KVTPASISKV VSSLLAKPAS TVAVGNLDVL 420
  421 PYYDEL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 93.09691
Match: 1bccA
Description: Cytochrome bc1 core subunit 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor 10.0305725791312 bayes_pls_golite062009
ubiquinol-cytochrome-c reductase activity 10.0305725791312 bayes_pls_golite062009
metallopeptidase activity 7.31794755224524 bayes_pls_golite062009
metalloendopeptidase activity 7.31174048559335 bayes_pls_golite062009
peptidase activity 7.05972470989638 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors 6.64269017601856 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 6.57226784092621 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 4.17510847735476 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 4.03221088799464 bayes_pls_golite062009
oxidoreductase activity 3.89224384280888 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 3.48526983761385 bayes_pls_golite062009
endopeptidase activity 3.25021389096625 bayes_pls_golite062009
hydrolase activity 2.79262298779436 bayes_pls_golite062009
transporter activity 1.55442313420533 bayes_pls_golite062009
transmembrane transporter activity 1.40378628474509 bayes_pls_golite062009
binding 1.36672893197944 bayes_pls_golite062009
catalytic activity 1.30647052031202 bayes_pls_golite062009
substrate-specific transporter activity 1.29599547747567 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.16717310870379 bayes_pls_golite062009
ion transmembrane transporter activity 1.05022391589259 bayes_pls_golite062009
cation transmembrane transporter activity 0.961854978876222 bayes_pls_golite062009
protein binding 0.443531652837756 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.11486391789734 bayes_pls_golite062009
pyrophosphatase activity 0.077701103001661 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.0688257218639591 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.0662171656580391 bayes_pls_golite062009

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