| Protein: | slm9 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 807 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for slm9.
| Description | E-value | Query Range |
Subject Range |
|
|
614.0 | [0..3] | [762..728] |
|
|
576.0 | [0..39] | [668..1147] |
|
|
560.0 | [0..12] | [673..865] |
|
|
554.0 | [0..36] | [730..817] |
|
|
548.0 | [0..43] | [668..1023] |
|
|
539.0 | [0..18] | [762..1663] |
|
Region A: Residues: [1-661] |
1 11 21 31 41 51
| | | | | |
1 MHIFVPKLLE NHQFSSISSS KDFVAVSAET NVYILSKDFF YPKSSEKRII QSLNGHKTTH 60
61 LSFDSPISCI RFTYDGSCLA VATEAGTFLY HSEKWDKAFQ VLSGPAYEVC WSQQGHILAT 120
121 SWKQISIYVK DEGLRTETIV KKTEHADSNH QPAVSIEESK EAVESTSQSS EISFKLIKVI 180
181 EGHHTFVGGL AFDPMGQFLA SQSFDHTLKV WKLSTFGVEK SIAKPFEQMP TGNRFLRLSW 240
241 SPDGAHIASV NAVNEGAYVI AIVQRDTWTY DINLVGHQGP LECATFNPYL YEDPFQKSII 300
301 ASAAHDGCVS IWNTACARPM AVIHELSCSS FVDLQWSTSG FELYGVSLDG NLMLLQFEES 360
361 EFGEKMDTIH YPDDLSYFNS SRSKAHVNKN AAADRTTSPT QGQPESPSKS ILLRPPPSIA 420
421 SSPESKRRKC PKKFVARPPV PHPTSLYSQI RIGCPYLKPK LVISKSFGTL IVKNHNQLSL 480
481 LKCTFSNLDG NDCSWFSYLP NAIVLANGTS VFWAVATEDS SIYIYSPAGR LLLPPVVVAA 540
541 TPCFLECCGD FLCCIVSTGL LYIWNIKNFE AIHSPVSTLP LFHSNFSVSK IARGPSIEQF 600
601 FVTKQGHPVA IMSDGNAFAF IRDSSSWLRV SEGWWMIGSQ YWGPLASESN EESPLGFLER 660
661 C
|
| Detection Method: |  |
| Confidence: | 52.221849 |
| Match: | 1nr0A |
| Description: | Actin interacting protein 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| transcription regulator activity | 2.3610959773142 | bayes_pls_golite062009 |
| nucleic acid binding | 2.30918780727915 | bayes_pls_golite062009 |
| transcription repressor activity | 2.29049708962212 | bayes_pls_golite062009 |
| DNA binding | 1.71685536470455 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.7032681012791 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.41752877005447 | bayes_pls_golite062009 |
| protein binding | 1.21879977456466 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.19593750149343 | bayes_pls_golite062009 |
| transcription factor activity | 1.08768505897883 | bayes_pls_golite062009 |
| 0.88172763425403 | bayes_pls_golite062009 | |
| histone binding | 0.685319917508843 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.676924760416604 | bayes_pls_golite062009 |
| actin binding | 0.529861581509437 | bayes_pls_golite062009 |
| transcription factor binding | 0.489473003915035 | bayes_pls_golite062009 |
| snoRNA binding | 0.347797037104681 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.30761651528651 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.164101908612691 | bayes_pls_golite062009 |
| chromatin binding | 0.151977098745772 | bayes_pls_golite062009 |
| structural molecule activity | 0.0936365746095786 | bayes_pls_golite062009 |
|
Region A: Residues: [662-807] |
1 11 21 31 41 51
| | | | | |
1 TDEEIIKAGR GRFLQRLVKA LMLRQGYDNY EMLVSIRHLE NRLMSSAKLD LEYDFRENLI 60
61 LYAKKIAEEG MKDKMDELCK ELLGPLRIPH NGIDTVKVGN RLWSPTIAGN NKRNLLKDII 120
121 IHTAKYRDMQ RITSQYSDLL RRSALL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
