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Protein Overview: slm9

General Information:
Name(s) found: slm9 / SPBC15D4.03 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • hira protein Slm9 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 807 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed articleLink to PubMed article]
    nuclear chromatin [ICLink to PubMed article]
    cytosol [IDALink to PubMed article]
    protein complex [RCALink to PubMed article]
    Biological Process: chromatin modification [IEA]
    negative regulation of transcription from RNA polymerase II promoter, mitotic [IMPLink to PubMed article]
    chromatin silencing at centromere [IMPLink to PubMed article]
    chromosome segregation [IMPLink to PubMed article]
    chromatin silencing at silent mating-type cassette [IMPLink to PubMed article]
    regulation of mitotic cell cycle [IMPLink to PubMed article]
    nucleosome assembly [TASLink to PubMed article]
    cellular protein localization [IGILink to PubMed article]
    cellular response to nitrogen starvation [IMPLink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]
    transcription corepressor activity [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHIFVPKLLE NHQFSSISSS KDFVAVSAET NVYILSKDFF YPKSSEKRII QSLNGHKTTH  60
   61 LSFDSPISCI RFTYDGSCLA VATEAGTFLY HSEKWDKAFQ VLSGPAYEVC WSQQGHILAT 120
  121 SWKQISIYVK DEGLRTETIV KKTEHADSNH QPAVSIEESK EAVESTSQSS EISFKLIKVI 180
  181 EGHHTFVGGL AFDPMGQFLA SQSFDHTLKV WKLSTFGVEK SIAKPFEQMP TGNRFLRLSW 240
  241 SPDGAHIASV NAVNEGAYVI AIVQRDTWTY DINLVGHQGP LECATFNPYL YEDPFQKSII 300
  301 ASAAHDGCVS IWNTACARPM AVIHELSCSS FVDLQWSTSG FELYGVSLDG NLMLLQFEES 360
  361 EFGEKMDTIH YPDDLSYFNS SRSKAHVNKN AAADRTTSPT QGQPESPSKS ILLRPPPSIA 420
  421 SSPESKRRKC PKKFVARPPV PHPTSLYSQI RIGCPYLKPK LVISKSFGTL IVKNHNQLSL 480
  481 LKCTFSNLDG NDCSWFSYLP NAIVLANGTS VFWAVATEDS SIYIYSPAGR LLLPPVVVAA 540
  541 TPCFLECCGD FLCCIVSTGL LYIWNIKNFE AIHSPVSTLP LFHSNFSVSK IARGPSIEQF 600
  601 FVTKQGHPVA IMSDGNAFAF IRDSSSWLRV SEGWWMIGSQ YWGPLASESN EESPLGFLER 660
  661 CTDEEIIKAG RGRFLQRLVK ALMLRQGYDN YEMLVSIRHL ENRLMSSAKL DLEYDFRENL 720
  721 ILYAKKIAEE GMKDKMDELC KELLGPLRIP HNGIDTVKVG NRLWSPTIAG NNKRNLLKDI 780
  781 IIHTAKYRDM QRITSQYSDL LRRSALL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..661] PSI-BLAST 52.221849 Actin interacting protein 1
    2 View Details [662..807] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.42570478946173 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.3610959773142 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.30918780727915 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.29049708962212 bayes_pls_golite062009
  • DNA binding
    		•  1.71685536470455 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.7032681012791 bayes_pls_golite062009
  • transcription corepressor activity
    		•  1.41752877005447 bayes_pls_golite062009
  • protein binding
    		•  1.21879977456466 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.19593750149343 bayes_pls_golite062009
  • transcription factor activity
    		•  1.08768505897883 bayes_pls_golite062009
    		• 0.88172763425403 bayes_pls_golite062009
  • histone binding
    		•  0.685319917508843 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.676924760416604 bayes_pls_golite062009
  • actin binding
    		•  0.529861581509437 bayes_pls_golite062009
  • transcription factor binding
    		•  0.489473003915035 bayes_pls_golite062009
  • snoRNA binding
    		•  0.347797037104681 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.30761651528651 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.164101908612691 bayes_pls_golite062009
  • chromatin binding
    		•  0.151977098745772 bayes_pls_golite062009
  • structural molecule activity
    		•  0.0936365746095786 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle