| Protein: | rpa43 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 173 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpa43.
| Description | E-value | Query Range |
Subject Range |
|
|
173.0 | [0..6] | [155..301] |
|
|
166.0 | [0..6] | [155..15] |
|
|
164.0 | [0..6] | [170..25] |
|
|
164.0 | [0..6] | [171..2] |
|
|
164.0 | [0..5] | [170..2] |
|
|
163.0 | [0..6] | [170..57] |
|
|
163.0 | [0..9] | [170..54] |
|
|
162.0 | [0..6] | [170..2] |
|
Region A: Residues: [1-173] |
1 11 21 31 41 51
| | | | | |
1 MPDLSLYKQT VDLYLSIAPG HSRDPLNAIQ EHMDSMILSK LPRINGIVLA YDNIRFLEKS 60
61 AKVMYDSPFS FIWVRVDVLV FSPKKGDCLE GKINLVSPSH IGLLILGIFN ASIPRKSIPK 120
121 DWIFIEPDTT EEQGRWKTND GNILEPGKDL EFVVDGIQRE AGLTMVQGTL ANS
|
| Detection Method: |  |
| Confidence: | 39.045757 |
| Match: | 2c35B |
| Description: | Subunits Rpb4 and Rpb7 of human RNA polymerase II |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA polymerase activity | 8.99678434167899 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 8.99678434167899 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 6.44182740737882 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 4.38397648153969 | bayes_pls_golite062009 |
| transferase activity | 3.90847350895308 | bayes_pls_golite062009 |
| DNA binding | 3.47278447192966 | bayes_pls_golite062009 |
| binding | 2.49444158679862 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.13063800565247 | bayes_pls_golite062009 |
| transcription regulator activity | 2.10110937001387 | bayes_pls_golite062009 |
| nucleic acid binding | 1.99830040887738 | bayes_pls_golite062009 |
| structural molecule activity | 1.9177190829469 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.81524862921454 | bayes_pls_golite062009 |
| single-stranded DNA binding | 1.62996999055328 | bayes_pls_golite062009 |
| ribonuclease activity | 1.19236946227657 | bayes_pls_golite062009 |
| catalytic activity | 1.02941336036162 | bayes_pls_golite062009 |
| transcription factor activity | 0.937752547283357 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.76825863122436 | bayes_pls_golite062009 |
| nuclease activity | 0.57381531077345 | bayes_pls_golite062009 |
| translation regulator activity | 0.31332179848255 | bayes_pls_golite062009 |
| protein binding | 0.304236148450282 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.263197317040851 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.2080607201312 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.125256208482441 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.109774918833391 | bayes_pls_golite062009 |
