| Protein: | myh1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 461 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for myh1.
| Description | E-value | Query Range |
Subject Range |
|
|
406.0 | [0..1] | [461..1] |
|
|
348.0 | [0..10] | [449..55] |
|
|
347.0 | [0..10] | [449..67] |
|
|
346.0 | [0..10] | [449..56] |
|
Region A: Residues: [1-461] |
1 11 21 31 41 51
| | | | | |
1 MSDSNHSLDL HSYTQLEVER FRESLIQFYD KTKRILPWRK KECIPPSEDS PLEDWEQPVQ 60
61 RLYEVLVSEI MLQQTRVETV KRYYTKWMET LPTLKSCAEA EYNTQVMPLW SGMGFYTRCK 120
121 RLHQACQHLA KLHPSEIPRT GDEWAKGIPG VGPYTAGAVL SIAWKQPTGI VDGNVIRVLS 180
181 RALAIHSDCS KGKANALIWK LANELVDPVR PGDFNQALME LGAITCTPQS PRCSVCPISE 240
241 ICKAYQEQNV IRDGNTIKYD IEDVPCNICI TDIPSKEDLQ NWVVARYPVH PAKTKQREER 300
301 ALVVIFQKTD PSTKEKFFLI RKRPSAGLLA GLWDFPTIEF GQESWPKDMD AEFQKSIAQW 360
361 ISNDSRSLIK KYQSRGRYLH IFSHIRKTSH VFYAIASPDI VTNEDFFWIS QSDLEHVGMC 420
421 ELGLKNYRAA LEIKKRKVTS LSNFKEPKLT SARRIVTKAE C
|
| Detection Method: |  |
| Confidence: | 75.69897 |
| Match: | 1rrsA |
| Description: | MutY adenine glycosylase in complex with DNA containing an abasic site |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA-(apurinic or apyrimidinic site) lyase activity | 3.71152530486175 | bayes_pls_golite062009 |
| MutLbeta complex binding | 3.54991362477413 | bayes_pls_golite062009 |
| MutSbeta complex binding | 3.54991362477413 | bayes_pls_golite062009 |
| oxidized base lesion DNA N-glycosylase activity | 2.49872706126491 | bayes_pls_golite062009 |
| 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity | 2.21048599823382 | bayes_pls_golite062009 |
| damaged DNA binding | 2.00388798014411 | bayes_pls_golite062009 |
| hydrolase activity | 1.97832429767892 | bayes_pls_golite062009 |
| DNA binding | 1.70910448624199 | bayes_pls_golite062009 |
| alkylbase DNA N-glycosylase activity | 1.5832578018127 | bayes_pls_golite062009 |
| catalytic activity | 1.49075808737475 | bayes_pls_golite062009 |
| binding | 1.39782212043388 | bayes_pls_golite062009 |
| oxidized purine base lesion DNA N-glycosylase activity | 1.32985950765371 | bayes_pls_golite062009 |
| oxidized pyrimidine base lesion DNA N-glycosylase activity | 1.2016453685638 | bayes_pls_golite062009 |
| nucleic acid binding | 1.06392208444166 | bayes_pls_golite062009 |
| DNA-3-methyladenine glycosylase I activity | 1.06383943982125 | bayes_pls_golite062009 |
| transcription regulator activity | 0.953912155797942 | bayes_pls_golite062009 |
| uracil DNA N-glycosylase activity | 0.879508131574476 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.85419760398899 | bayes_pls_golite062009 |
| purine-specific mismatch base pair DNA N-glycosylase activity | 0.68578837518217 | bayes_pls_golite062009 |
| mismatch base pair DNA N-glycosylase activity | 0.661651574677137 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.57099109384393 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.546676461152337 | bayes_pls_golite062009 |
| transcription factor activity | 0.181268475863531 | bayes_pls_golite062009 |
| protein binding | 0.114897414738363 | bayes_pls_golite062009 |
| carbon-oxygen lyase activity | 0.0676784802238829 | bayes_pls_golite062009 |
| inorganic cation transmembrane transporter activity | 0.00783582682768413 | bayes_pls_golite062009 |
