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View Structure Prediction Details

Protein: tuf1
Organism: Schizosaccharomyces pombe
Length: 439 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tuf1.

Description E-value Query
Range		 Subject
Range
gi|32186880 - gi|32186880|gb|AAP72172.1| reconstructed ancestral elongation factor Tu ML-stem [synthetic construct...
 386.0 [0..42] [439..1]
EFTU_XANAC - Elongation factor Tu OS=Xanthomonas axonopodis pv. citri GN=tufA PE=3 SV=1
EFTU_XANAC - Elongation factor Tu OS=Xanthomonas axonopodis pv. citri (strain 306) GN=tufA PE=3 SV=1
EFTU_XANC5 - Elongation factor Tu OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=tuf1 PE=3 SV=1
 384.0 [0..42] [438..1]
EFTU_THICU - Elongation factor Tu OS=Thiobacillus cuprina GN=tuf PE=3 SV=1
EFTU_THIDL - Elongation factor Tu OS=Thiomonas delicata GN=tuf PE=3 SV=1
 383.0 [0..42] [439..1]
EFTU_XANOR - Elongation factor Tu OS=Xanthomonas oryzae pv. oryzae GN=tuf1 PE=3 SV=1
EFTU_XANOR - Elongation factor Tu OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) GN=tuf1 PE=3 SV=1
EFTU_XANOM - Elongation factor Tu OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=tuf1 PE=3 SV=1
 383.0 [0..42] [438..1]
EFTU_BURVG - Elongation factor Tu OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=tuf1 PE=3 SV=1
 382.0 [0..42] [439..1]
EFTU_ACICJ - Elongation factor Tu OS=Acidiphilium cryptum (strain JF-5) GN=tuf PE=3 SV=1
 382.0 [0..42] [437..1]
EFTU_BURCA - Elongation factor Tu OS=Burkholderia cenocepacia (strain AU 1054) GN=tuf1 PE=3 SV=1
EFTU_BURCH - Elongation factor Tu OS=Burkholderia cenocepacia (strain HI2424) GN=tuf1 PE=3 SV=1
EFTU_BURCM - Elongation factor Tu OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=tuf1 PE=3 SV=1
EFTU_BURS3 - Elongation factor Tu OS=Burkholderia sp. (strain 383) GN=tuf1 PE=3 SV=1
EFTU_BURL3 - Elongation factor Tu OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194 / 383...
gi|118712864, gi... - gi|170731680|ref|YP_001763627.1| elongation factor Tu [Burkholderia cenocepacia MC0-3], gi|170731667...
 381.0 [0..42] [439..1]
EFTU_BURCE - Elongation factor Tu OS=Burkholderia cepacia GN=tuf PE=3 SV=1
 381.0 [0..42] [439..1]
EFTU_BURXL - Elongation factor Tu OS=Burkholderia xenovorans (strain LB400) GN=tuf1 PE=3 SV=1
 381.0 [0..42] [439..1]

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Predicted Domain #1
Region A:
Residues: [1-439] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSAKATSLL FQGFRKNCLR LNRISFASGL INRFTVPART YADEKVFVRK KPHVNIGTIG  60
   61 HVDHGKTTLT AAITKCLSDL GQASFMDYSQ IDKAPEEKAR GITISSAHVE YETANRHYAH 120
  121 VDCPGHADYI KNMITGAATM DGAIIVVSAT DGQMPQTREH LLLARQVGVK QIVVYINKVD 180
  181 MVEPDMIELV EMEMRELLSE YGFDGDNTPI VSGSALCALE GREPEIGLNS ITKLMEAVDS 240
  241 YITLPERKTD VPFLMAIEDV FSISGRGTVV TGRVERGTLK KGAEIEIVGY GSHLKTTVTG 300
  301 IEMFKKQLDA AVAGDNCGLL LRSIKREQLK RGMIVAQPGT VAPHQKFKAS FYILTKEEGG 360
  361 RRTGFVDKYR PQLYSRTSDV TVELTHPDPN DSDKMVMPGD NVEMICTLIH PIVIEKGQRF 420
  421 TVREGGSTVG TALVTELLD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 102.0
Match: 1b23P
Description: Elongation factor Tu (EF-Tu), domain 2; Elongation factor Tu (EF-Tu); Elongation factor Tu (EF-Tu), N-terminal (G) domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
translation elongation factor activity 8.90683166637832 bayes_pls_golite062009
translation factor activity, nucleic acid binding 4.8378725567094 bayes_pls_golite062009
translation regulator activity 4.79814772079421 bayes_pls_golite062009
binding 2.01755875920323 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
nucleic acid binding 0.913322399315129 bayes_pls_golite062009
structural constituent of ribosome 0.860102064846772 bayes_pls_golite062009
peptidyltransferase activity 0.705667095586631 bayes_pls_golite062009
motor activity 0.677658554107 bayes_pls_golite062009
purine nucleotide binding 0.569910969126728 bayes_pls_golite062009
purine ribonucleotide binding 0.568840867400671 bayes_pls_golite062009
ribonucleotide binding 0.568779924702229 bayes_pls_golite062009
nucleotide binding 0.564275755355315 bayes_pls_golite062009
DNA binding 0.376487324624615 bayes_pls_golite062009
ATP binding 0.1860481660648 bayes_pls_golite062009
adenyl ribonucleotide binding 0.152859582615242 bayes_pls_golite062009
transcription regulator activity 0.150159515184919 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.147579541298736 bayes_pls_golite062009
adenyl nucleotide binding 0.138615225841109 bayes_pls_golite062009
pyrophosphatase activity 0.133017653323467 bayes_pls_golite062009
microtubule motor activity 0.11674780318211 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.113504049290503 bayes_pls_golite062009
structural molecule activity 0.11239762372728 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.111293884322157 bayes_pls_golite062009
protein binding 0.071010918255742 bayes_pls_golite062009
helicase activity 0.0450969969658499 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle