| Protein: | Imp-PF, Imp-PE, ... |
| Organism: | Drosophila melanogaster |
| Length: | 573 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Imp-PF, Imp-PE, ....
| Description | E-value | Query Range |
Subject Range |
|
|
325.0 | [0..1] | [542..1] |
|
Region A: Residues: [1-236] |
1 11 21 31 41 51
| | | | | |
1 MASELDQFAD LELSKEDREQ IFDPPLDRQQ LEGAGTSRAA VGLNGVEFEG SKLHAEQLDK 60
61 NQRRSQRNQR NPYPGMPGPG RQADFPLRIL VQSEMVGAII GRQGSTIRTI TQQSRARVDV 120
121 HRKENVGSLE KSITIYGNPE NCTNACKRIL EVMQQEAIST NKGEICLKIL AHNNLIGRII 180
181 GKSGNTIKRI MQDTDTKITV SSINDINSFN LERIITVKGL IENMSRAENQ ISTKLR
|
| Detection Method: |  |
| Confidence: | 33.69897 |
| Match: | 1e3hA |
| Description: | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.24341202600661 | bayes_pls_golite062009 |
| RNA binding | 2.47373172667773 | bayes_pls_golite062009 |
| nucleic acid binding | 1.64421905267791 | bayes_pls_golite062009 |
| binding | 1.38311294671926 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.28199205469179 | bayes_pls_golite062009 |
| transcription termination factor activity | 1.01993495617192 | bayes_pls_golite062009 |
| DNA binding | 1.01454217691792 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.97496043954059 | bayes_pls_golite062009 |
| ribonuclease activity | 0.702449673647117 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.487005194393476 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 0.417864080058801 | bayes_pls_golite062009 |
| mRNA binding | 0.403794675006504 | bayes_pls_golite062009 |
| 0.371217633915521 | bayes_pls_golite062009 | |
| sequence-specific DNA binding | 0.32084431704638 | bayes_pls_golite062009 |
| transcription factor activity | 0.298729064067577 | bayes_pls_golite062009 |
| structural molecule activity | 0.210607270192918 | bayes_pls_golite062009 |
| catalytic activity | 0.10089766806364 | bayes_pls_golite062009 |
|
Region A: Residues: [237-298] |
1 11 21 31 41 51
| | | | | |
1 QSYENDLQAM APQSLMFPGL HPMAMMSTPG NGMVFNTSMP FPSCQSFAMS KTPASVVPPV 60
61 FP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [299-469] |
1 11 21 31 41 51
| | | | | |
1 NDLQETTYLY IPNNAVGAII GTRGSHIRSI MRFSNASLKI APLDADKPLD QQTERKVTIV 60
61 GTPEGQWKAQ YMIFEKMREE GFMCGTDDVR LTVELLVASS QVGRIIGKGG QNVRELQRVT 120
121 GSVIKLPEHA LAPPSGGDEE TPVHIIGLFY SVQSAQRRIR AMMLSTNPPP I
|
| Detection Method: | |
| Confidence: | 19.522879 |
| Match: | 1j4wA |
| Description: | Far upstream binding element, FBP, KH3 and KH4 domains |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.18414740305744 | bayes_pls_golite062009 |
| nucleic acid binding | 3.87735820318945 | bayes_pls_golite062009 |
| mRNA binding | 3.82977088614136 | bayes_pls_golite062009 |
| binding | 2.8667878224392 | bayes_pls_golite062009 |
| transcription regulator activity | 1.43703138180882 | bayes_pls_golite062009 |
| DNA binding | 1.20852534725468 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.489176583045793 | bayes_pls_golite062009 |
| protein binding | 0.468975312217329 | bayes_pls_golite062009 |
| 0.434422752178353 | bayes_pls_golite062009 | |
| transcription factor activity | 0.386248501195543 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
|
Region A: Residues: [470-573] |
1 11 21 31 41 51
| | | | | |
1 TKKQKAAKEQ LQQQQQSLAG AASSGSQQQQ PQSPSQQQAL PPQLHHQPVS SASSSSTPPA 60
61 HHQQQASTAA TSHQLQQQQP SPPPPGNATA AAAQQQQQLA SSQQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
