| Protein: | Spt6-PA, FBpp0309041 |
| Organism: | Drosophila melanogaster |
| Length: | 1831 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Spt6-PA, FBpp0309041.
| Description | E-value | Query Range |
Subject Range |
|
|
1245.0 | [0..1] | [1831..1] |
|
Region A: Residues: [1-359] |
1 11 21 31 41 51
| | | | | |
1 MAEFLDSEAE ESEEEEELDV NERKRLKKLK AAVSDSSEEE EDDEERLREE LKDLIDDNPI 60
61 EEDDGSGYDS DGVGSGKKRK KHEDDDLDDR LEDDDYDLIE ENLGVKVERR KRFKRLRRIH 120
121 DNESDGEEQH VDEGLVREQI AEQLFDENDE SIGHRSERSH READDYDDVD TESDADDFIV 180
181 DDNGRPIAEK KKKRRPIFTD ASLQEGQDIF GVDFDYDDFS KYEEDDYEDD SEGDEYDEDL 240
241 GVGDDTRVKK KKALKKKVVK KTIFDIYEPS ELKRGHFTDM DNEIRKTDIP ERMQLREVPV 300
301 TPVPEGSDEL DLEAEWIYKY AFCKHTVSEQ EKPESREKMR KPPTTVNKIK QTLEFIRNQ
|
| Detection Method: |  |
| Confidence: | 30.30103 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [360-420] |
1 11 21 31 41 51
| | | | | |
1 QLEVPFIAFY RKEYVKPELN IDDLWKVYYY DGIWCQLNER KRKLKVLFEK MRQFQLDTLC 60
61 A
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [421-1336] |
1 11 21 31 41 51
| | | | | |
1 DTDQPVPDDV RLILDSDFER LADVQSMEEL KDVHMYFLLN YSHELPRMQA EQRRKAIQER 60
61 REAKARRQAA AAENGDDAAE AIVVPEPEDD DDPELIDYQL KQASNSSPYA VFRKAGICGF 120
121 AKHFGLTPEQ YAENLRDNYQ RNEITQESIG PTELAKQYLS PRFMTTDEVI HAAKYVVARQ 180
181 LAQEPLLRKT MREVYFDRAR INIRPTKNGM VLIDENSPVY SMKYVAKKPV SDLFGDQFIK 240
241 LMMAEEEKLL EITFLEEFEG NACANGTPGD YVEESKALYQ LDQFAKHVQE WNKLRAECVQ 300
301 LALQKWVIPD LIKELRSTLH EEAQQFVLRS CTGKLYKWLK VAPYKPQLPP DFGYEEWSTL 360
361 RGIRVLGLAY DPDHSVAAFC AVTTVEGDIS DYLRLPNILK RKNSYNLEEK AQKLADLRKL 420
421 SDFIKMKKPH IVVIGAESRD AQNIQADIKE ILHELETSEQ FPPIEVEIID NELAKIYANS 480
481 KKGESDFKEY PPLLKQAASL ARKMQDPLVE YSQLCDADDE ILCLRYHPLQ ERVPREQLLE 540
541 QLSLQFINRT SEVGLDINLM VQNSRTINLL QYICGLGPRK GQALLKLLKQ SNQRLENRTQ 600
601 LVTVCHLGPR VFINCSGFIK IDTSSLGDST EAYVEVLDGS RVHPETYEWA RKMAIDAMEY 660
661 DDEETNPAGA LEEILESPER LKDLDLDAFA VELERQGFGS KSITLYDIRN ELSCLYKDYR 720
721 TPYTKPSAEE LFDMLTKETP DSFYVGKCVT AMVTGFTYRR PQGDQLDSAN PVRLDSNESW 780
781 QCPFCHKDDF PELSEVWNHF DANACPGQPS GVRVRLENGL PGFIHIKNLS DRQVRNPEER 840
841 VRVSQMIHVR IIKIDIDRFS VECSSRTADL KDVNNEWRPR RDNYYDYVTE EQDNRKVSDA 900
901 KARALKRKIY ARRVIA
|
| Detection Method: | |
| Confidence: | 1000.0 |
| Match: | 2oceA |
| Description: | No description for 2oceA was found. |
| Term | Confidence | Notes |
| ribonuclease activity | 4.78408578264511 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 4.47575558124516 | bayes_pls_golite062009 |
| exoribonuclease activity | 4.45956182921702 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 3.99660019081433 | bayes_pls_golite062009 |
| nucleic acid binding | 3.87899047526266 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 3.51306349336452 | bayes_pls_golite062009 |
| DNA binding | 3.47278447192966 | bayes_pls_golite062009 |
| binding | 3.35781855253373 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 3.07263153665399 | bayes_pls_golite062009 |
| exonuclease activity | 2.66053639652924 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.13063800565247 | bayes_pls_golite062009 |
| transcription regulator activity | 2.10110937001387 | bayes_pls_golite062009 |
| structural molecule activity | 1.9177190829469 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.81524862921454 | bayes_pls_golite062009 |
| single-stranded DNA binding | 1.62996999055328 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 1.36224060256697 | bayes_pls_golite062009 |
| excinuclease ABC activity | 1.24466762466323 | bayes_pls_golite062009 |
| endonuclease activity | 0.991569665925888 | bayes_pls_golite062009 |
| damaged DNA binding | 0.95191912850966 | bayes_pls_golite062009 |
| transcription factor activity | 0.937752547283357 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.76825863122436 | bayes_pls_golite062009 |
| protein binding | 0.767256907671421 | bayes_pls_golite062009 |
| endoribonuclease activity, producing 5'-phosphomonoesters | 0.708753843279937 | bayes_pls_golite062009 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.598360955770972 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.583085644017496 | bayes_pls_golite062009 |
| nuclease activity | 0.57381531077345 | bayes_pls_golite062009 |
| translation regulator activity | 0.515576958825022 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 0.510809870824979 | bayes_pls_golite062009 |
| RNA polymerase activity | 0.510809870824979 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.468402630523277 | bayes_pls_golite062009 |
| telomeric DNA binding | 0.361382760487809 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 0.24906263529692 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.233952169113693 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.2080607201312 | bayes_pls_golite062009 |
| RNA binding | 0.18502033889261 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 0.09423425042945 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.0189279348688405 | bayes_pls_golite062009 |
| endoribonuclease activity | 0.016619833072142 | bayes_pls_golite062009 |
| chromatin binding | 0.0075451629397203 | bayes_pls_golite062009 |
|
Region A: Residues: [1337-1474] |
1 11 21 31 41 51
| | | | | |
1 HPSFFNKSYA EVVAMLAEAD QGEVALRPSS KSKDHLTATW KVADDIFQHI DVREEGKEND 60
61 FSLGRSLWIG TEEFEDLDEI IARHIMPMAL AARELIQYKY YKPNMVTGDE NERDVMEKLL 120
121 REEKANDPKK IHYFFTAS
|
| Detection Method: | |
| Confidence: | 3.91 |
| Match: | 1ka6A |
| Description: | The Xlp protein Sap |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.53841763802611 | bayes_pls_golite062009 |
| protein binding | 2.59400723645972 | bayes_pls_golite062009 |
| transcription regulator activity | 2.33050919783116 | bayes_pls_golite062009 |
| DNA binding | 1.69194220365195 | bayes_pls_golite062009 |
| nucleic acid binding | 1.68849923149905 | bayes_pls_golite062009 |
| transcription factor activity | 1.02720628759707 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.364108622844773 | bayes_pls_golite062009 |
|
Region A: Residues: [1475-1831] |
1 11 21 31 41 51
| | | | | |
1 RAMPGKFLLS YLPKTKVRHE YVTVMPEGYR FRGQIFDTVN SLLRWFKEHW LDPTATPASA 60
61 SASNLTPLHL MRPPPTISSS SQTSLGPQAP YSVTGSVTGG TPRSGISSAV GGGGSSAYSI 120
121 TQSITGYGTS GSSAPGAGVS SSHYGSSSTP SFGAINTPYT PSGQTPFMTP YTPHASQTPR 180
181 YGHNVPSPSS QSSSSQRHHY GSSSGTGSTP RYHDMGGGGG GGVGGGGGSN AYSMQPHHQQ 240
241 RAKENLDWQL ANDAWARRRP QQHQSHQSYH AQQQHHHSQQ QPHMGMSMNM GITMSLGRGT 300
301 GGGGGGGYGS TPVNDYSTGG GHNRGMSSKA SVRSTPRTNA SPHSMNLGDA TPLYDEN
|
| Detection Method: | |
| Confidence: | 12.221849 |
| Match: | 1y0fB |
| Description: | No description for 1y0fB was found. |
