| Protein: | pho-PB, pho-PA |
| Organism: | Drosophila melanogaster |
| Length: | 520 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pho-PB, pho-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
654.0 | [0..2] | [519..333] |
|
Region A: Residues: [1-235] |
1 11 21 31 41 51
| | | | | |
1 MAYERFGIIL QSEQYDEDIG NTKVNQKMNE GNHYDLHRKN AFDRIIHSES KKGDNVINYN 60
61 IHENDKIKAA DNIFSSKLKM NPNMSYEMNI NCFKNIGYGE NQETSKVLTN SLSNNDINTE 120
121 ESGVVDKNSP FLTLGTTILN SNGKSRRWEQ KLVHIKTMEG EFSVTMWASG ISDDEYSGSD 180
181 QIVGASDLLK GKEEFGIDGF TSQQNKEYQK MESKFTNAQT LEMPHPISSV QIMDH
|
| Detection Method: |  |
| Confidence: | 53.30103 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [236-329] |
1 11 21 31 41 51
| | | | | |
1 LIKERGNLSQ ENNISERILS KTTLSFEEPI LLPDSSSIEL VNETAAMTIN NHRTLSNHTG 60
61 NTGDLHALPS SVPFRIGLHE GQVNDCLSTI SQST
|
| Detection Method: | |
| Confidence: | 7.30103 |
| Match: | 1x6hA |
| Description: | Solution structures of the C2H2 type zinc finger domain of human Transcriptional repressor CTCF |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.31369346002275 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| chromatin binding | 1.53640935908107 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.0497955246512 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.912796194488319 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.240825841910931 | bayes_pls_golite062009 |
| histone binding | 0.0619529561600476 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.0129353639725593 | bayes_pls_golite062009 |
|
Region A: Residues: [330-520] |
1 11 21 31 41 51
| | | | | |
1 HQDNTDSTGC GEMNLSEVTV SYTNDKKIAC PHKGCNKHFR DSSAMRKHLH THGPRVHVCA 60
61 ECGKAFVESS KLKRHQLVHT GEKPFQCTFE GCGKRFSLDF NLRTHVRIHT GDRPFVCPFD 120
121 ACNKKFAQST NLKSHILTHA KAKRNTSISG KSGCSNAESN SQSEDTSANY VKVELQDSVT 180
181 ENHVPFVVYA D
|
| Detection Method: | |
| Confidence: | 26.522879 |
| Match: | 1ubdC |
| Description: | Ying-yang 1 (yy1, zinc finger domain) |
Matching Structure (courtesy of the PDB): |
|
