| Protein: | danr-PA |
| Organism: | Drosophila melanogaster |
| Length: | 419 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for danr-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
218.0 | [0..1] | [417..1] |
|
Region A: Residues: [1-141] |
1 11 21 31 41 51
| | | | | |
1 MDISAYQHMN IRMSTRGKRP LRNLTPNDKV RAIQRIHNGE TKASVSRDIG VPESTLRGWC 60
61 KNEQKLRFMC RQLGPDHLGL DTPPEKRAKF ELQLQLPPKF VALPPNYEEL GFGALPYSPA 120
121 DYPVQNESLL EKLSLVEFVK K
|
| Detection Method: |  |
| Confidence: | 28.522879 |
| Match: | 1hlvA |
| Description: | DNA-binding domain of centromere binding protein B (CENP-B) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.20953772435302 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.26183812259792 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.14886080629275 | bayes_pls_golite062009 |
| chromatin binding | 0.876241359231159 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
|
Region A: Residues: [142-263] |
1 11 21 31 41 51
| | | | | |
1 NGGLHPEGAL HPGQAGVMDY SNNMLHQLNL LALLNSKLTP QTADVLVDAQ PKSEDNKVID 60
61 SPAASEDYSK NNYPLLSVKN WAKDPAKRVN SANQPEQVND KNNNALEANS SAPQALVTEQ 120
121 AK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [264-419] |
1 11 21 31 41 51
| | | | | |
1 TPMFSDTTMP LLPAPFPNPA DLAPVIAPVT PANAPPTGTD NQGAALLDWC KLFNASLNFL 60
61 AFAAAAASMQ PGGGGPGGPS YNPNQMASGG SEPDLETYPF NEALLKRLSP LAHSEASNES 120
121 YCDSEPEDLS VRSCASKASS RSHTPDKSVG SSDAEQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
