| Protein: | gi|24649179, gi|... |
| Organism: | Drosophila melanogaster |
| Length: | 692 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24649179, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
620.0 | [0..166] | [692..404] |
|
Region A: Residues: [1-88] |
1 11 21 31 41 51
| | | | | |
1 MSSSLKTSQS GGMYVKTSSI SGISSISGKE AASCYGGFMS PPLSANITAN NGEREMFRVP 60
61 GAKVETNESY ACGELQFPDF SHLCFAAE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [89-293] |
1 11 21 31 41 51
| | | | | |
1 TPNSVFSDCH NYAGQDQQQD SDQDDIVCAA AENTGMPYQQ GQYTQLNRED IFRFEPEDIA 60
61 RLTGESELPG IAQNSQYAVQ PANDSINLDI DYFNYDEINC QSKNQSPCSS PHLDAWLNFN 120
121 LGEISAAASS SAASPKLGNV FEEQVKEEAS PAKLPSMNST FGTPKCIPMC ASNYEDYANL 180
181 YQQGSGYSTE NYHNNMAQVV EKPNR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [294-515] |
1 11 21 31 41 51
| | | | | |
1 EHKAIWTIDE LDELMLGEQQ QFLQHHLQQQ HLQEQQEQLH QPHGQEQQTQ NCKDDLVNYL 60
61 SDEFIKAEEF RSLDSDDDEN YNEEEDDLDN DVFAPPAESD PKPDSTCCDP EAEPENEVIP 120
121 LICRWTGCDE EFPHQQAFVE HIEKCHVDVR KGEDFSCFWL DCPRRYKPFN ARYKLLIHMR 180
181 VHSGEKPNKC PFPGCNKAFS RLENLKIHQR SHTGERPYGC QY
|
| Detection Method: | |
| Confidence: | 50.522879 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [516-569] |
1 11 21 31 41 51
| | | | | |
1 KGCLKAFSNS SDRAKHQRTH YDTKPYACQL PGCTKRYTDP SSLRKHVKNH ALRN
|
| Detection Method: | |
| Confidence: | 25.69897 |
| Match: | 2gliA |
| Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.31369346002275 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| transcription repressor activity | 1.64349785387632 | bayes_pls_golite062009 |
| chromatin binding | 1.53640935908107 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.0497955246512 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.10558148421807 | bayes_pls_golite062009 |
|
Region A: Residues: [570-692] |
1 11 21 31 41 51
| | | | | |
1 ANGQLRRKSA GGASVPPSGP KKAAKTRRHS ESALVQRGVG AGVGVAVPSA PGDQRQHRSN 60
61 SCSEALLLQQ HQQQQQQQQQ QQKQHQPENV LQDLQHWQPQ QQQQRQQQHM AMATWRPHRK 120
121 RKC
|
| Detection Method: | |
| Confidence: | 21.30103 |
| Match: | 1meyC |
| Description: | Designed zinc finger protein |
Matching Structure (courtesy of the PDB): |
|
