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Protein Overview: gi|24649179, gi|...

General Information:
Name(s) found: gi|24649179 [NCBI NR]
gi|23172010 [NCBI NR]
Description(s) found:
Found 7 descriptions.
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  • gi|24649179|ref|NP_524457.2| lame duck, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|23172010|gb|AAF56082.2| lame duck, isoform A [Drosophila melanogaster] [NCBI NR]
    • Organism: Drosophila melanogaster
    Length: 692 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    intracellular [IEA]
    Biological Process: muscle organ development [IMP][TAS]
    skeletal muscle tissue development [IMP]
    myoblast fusion [IMP]
    regulation of transcription, DNA-dependent [ISS]
    regulation of transcription [ISS]
    somatic muscle development [IMP]
    Molecular Function: transcription factor activity [ISS]
    zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSLKTSQS GGMYVKTSSI SGISSISGKE AASCYGGFMS PPLSANITAN NGEREMFRVP  60
   61 GAKVETNESY ACGELQFPDF SHLCFAAETP NSVFSDCHNY AGQDQQQDSD QDDIVCAAAE 120
  121 NTGMPYQQGQ YTQLNREDIF RFEPEDIARL TGESELPGIA QNSQYAVQPA NDSINLDIDY 180
  181 FNYDEINCQS KNQSPCSSPH LDAWLNFNLG EISAAASSSA ASPKLGNVFE EQVKEEASPA 240
  241 KLPSMNSTFG TPKCIPMCAS NYEDYANLYQ QGSGYSTENY HNNMAQVVEK PNREHKAIWT 300
  301 IDELDELMLG EQQQFLQHHL QQQHLQEQQE QLHQPHGQEQ QTQNCKDDLV NYLSDEFIKA 360
  361 EEFRSLDSDD DENYNEEEDD LDNDVFAPPA ESDPKPDSTC CDPEAEPENE VIPLICRWTG 420
  421 CDEEFPHQQA FVEHIEKCHV DVRKGEDFSC FWLDCPRRYK PFNARYKLLI HMRVHSGEKP 480
  481 NKCPFPGCNK AFSRLENLKI HQRSHTGERP YGCQYKGCLK AFSNSSDRAK HQRTHYDTKP 540
  541 YACQLPGCTK RYTDPSSLRK HVKNHALRNA NGQLRRKSAG GASVPPSGPK KAAKTRRHSE 600
  601 SALVQRGVGA GVGVAVPSAP GDQRQHRSNS CSEALLLQQH QQQQQQQQQQ QKQHQPENVL 660
  661 QDLQHWQPQQ QQQRQQQHMA MATWRPHRKR KC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..88] deduced N/A No confident structure predictions are available.
    2 View Details [89..293] MSA 2.519982 View MSA. No confident structure predictions are available.
    3 View Details [294..515] PSI-BLAST 50.522879 No description for 2i13A was found.
    4 View Details [516..569] PSI-BLAST 25.69897 Five-finger GLI1
    5 View Details [570..692] PSI-BLAST 21.30103 Designed zinc finger protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • transcription regulator activity
    		•  4.70988788192472 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.58713908116892 bayes_pls_golite062009
  • DNA binding
    		•  4.56219307357342 bayes_pls_golite062009
  • transcription factor activity
    		•  3.50954949535763 bayes_pls_golite062009
  • binding
    		•  3.10743787485868 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.31369346002275 bayes_pls_golite062009
  • transcription activator activity
    		•  2.19952417915035 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.64349785387632 bayes_pls_golite062009
  • chromatin binding
    		•  1.53640935908107 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.42975942698743 bayes_pls_golite062009
  • transcription factor binding
    		•  1.39608963544799 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.0497955246512 bayes_pls_golite062009
  • protein binding
    		•  1.00484935878505 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.77874411480713 bayes_pls_golite062009
  • catalytic activity
    		•  0.245893663605433 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.10558148421807 bayes_pls_golite062009
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle