| Protein: | how-PA, how-PD |
| Organism: | Drosophila melanogaster |
| Length: | 405 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for how-PA, how-PD.
| Description | E-value | Query Range |
Subject Range |
|
|
368.0 | [0..57] | [405..59] |
|
Region A: Residues: [1-143] |
1 11 21 31 41 51
| | | | | |
1 MSVCESKAVV QQQLQQHLQQ QAAAAVVAVA QQQQAQAQAQ AQAQAQQQQQ APQVVVPMTP 60
61 QHLTPQQQQQ STQSIADYLA QLLKDRKQLA AFPNVFTHVE RLLDEEIARV RASLFQINGV 120
121 KKEPLTLPEP EGSVVTMNEK VYV
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [144-270] |
1 11 21 31 41 51
| | | | | |
1 PVREHPDFNF VGRILGPRGM TAKQLEQETG CKIMVRGKGS MRDKKKEDAN RGKPNWEHLS 60
61 DDLHVLITVE DTENRATVKL AQAVAEVQKL LVPQAEGEDE LKKRQLMELA IINGTYRDTT 120
121 AKSVAVC
|
| Detection Method: | |
| Confidence: | 49.39794 |
| Match: | 2bl5A |
| Description: | Solution structure of the KH-QUA2 region of the Xenopus STAR-GSG Quaking protein. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 4.28581120742478 | bayes_pls_golite062009 |
| RNA binding | 4.07234389285213 | bayes_pls_golite062009 |
| binding | 3.45962790790935 | bayes_pls_golite062009 |
| mRNA binding | 2.74771386314615 | bayes_pls_golite062009 |
| protein binding | 2.21586499514642 | bayes_pls_golite062009 |
| transcription regulator activity | 2.01194399592256 | bayes_pls_golite062009 |
| DNA binding | 1.78469836520678 | bayes_pls_golite062009 |
| transcription factor activity | 0.866815968834173 | bayes_pls_golite062009 |
| 0.649281624091344 | bayes_pls_golite062009 | |
| structure-specific DNA binding | 0.64468203163713 | bayes_pls_golite062009 |
| transcription repressor activity | 0.594072241231183 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.28490151670131 | bayes_pls_golite062009 |
| transcription activator activity | 0.210494225017032 | bayes_pls_golite062009 |
| transcription factor binding | 0.139588254197875 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
|
Region A: Residues: [271-405] |
1 11 21 31 41 51
| | | | | |
1 DEEWRRLVAA SDSRLLTSTG LPGLAAQIRA PAAAPLGAPL ILNPRMTVPT TAASILSAQA 60
61 APTAAFDQTG HGMIFAPYDY ANYAALAGNP LLTEYADHSV GAIKQQRRLA TNREHPYQRA 120
121 TVGVPAKPAG FIEIQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
