| Protein: | lsn-PA |
| Organism: | Drosophila melanogaster |
| Length: | 254 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lsn-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
335.0 | [0..1] | [252..1] |
|
|
333.0 | [0..2] | [253..3] |
|
|
331.0 | [0..2] | [253..3] |
|
|
331.0 | [0..2] | [253..3] |
|
|
331.0 | [0..2] | [253..3] |
|
|
330.0 | [0..2] | [253..3] |
|
|
327.0 | [0..2] | [252..3] |
|
|
326.0 | [0..2] | [251..3] |
|
Region A: Residues: [1-254] |
1 11 21 31 41 51
| | | | | |
1 MRRRVGLGAI QQQKLAAEKY KDKGTDLQEN QLEQMTKQME VFRVKLEEFA MKHKEDIRKN 60
61 SQFRKQFQEM CAAIGVDPLA TGKGFWSVLG MGDFYYELGV QVVEVCLAAN HKTGGLMELD 120
121 DLRRRLIAAR GQSSVHQEIT KEDILMAAKK LSIFGNGFVV HKLGKGKYIV QSIPGELSME 180
181 ETNILNAASN TEQGCVTQSQ LIKDLGWTDY RAQQSLDKVL GEGLCWIDKQ AGDEPAYWFP 240
241 SLFPGRNAQT TAAT
|
| Detection Method: |  |
| Confidence: | 73.0 |
| Match: | 1u5tA |
| Description: | Structure of the ESCRT-II endosomal trafficking complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.55329976718261 | bayes_pls_golite062009 |
| DNA binding | 5.08959163553491 | bayes_pls_golite062009 |
| nucleic acid binding | 4.99681957904233 | bayes_pls_golite062009 |
| transcription factor activity | 4.33152142980289 | bayes_pls_golite062009 |
| transcription repressor activity | 3.85678231380989 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.60738445921725 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.48053910222825 | bayes_pls_golite062009 |
| transcription activator activity | 2.37668609508629 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.2723726467408 | bayes_pls_golite062009 |
| specific transcriptional repressor activity | 0.96257232341735 | bayes_pls_golite062009 |
| transcription factor binding | 0.85714789329232 | bayes_pls_golite062009 |
| protein binding | 0.753698599635855 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.750801486608713 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.66743181561551 | bayes_pls_golite062009 |
| signal transducer activity | 0.574575108509588 | bayes_pls_golite062009 |
| molecular transducer activity | 0.574575108509588 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.322180400748724 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.23177057841536 | bayes_pls_golite062009 |
| hydrolase activity | 0.140191206949582 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.136726704233672 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.118016217031359 | bayes_pls_golite062009 |
