| Protein: | tin-PA |
| Organism: | Drosophila melanogaster |
| Length: | 416 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tin-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
144.0 | [0..1] | [396..1] |
|
Region A: Residues: [1-204] |
1 11 21 31 41 51
| | | | | |
1 MLQHHQQQAQ SGGYYDHYTQ SPSPGSLTNA DALNTTPFSV KDILNMVNQT EAYEGSYGHI 60
61 DGAATASALF AAGEYQNPHQ YLNHQQHQQS ELPIPQQQLH HQHLDDGATT SSSLSPLLPP 120
121 PPHQLYGGYQ DYGMPAHMFQ HHHGHPHQSF QHSASAYNMS ASQFYAGASA TAYQTPATYN 180
181 YNYAGSGEVY GGATPSAVGI KSEY
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [205-299] |
1 11 21 31 41 51
| | | | | |
1 IPTPYVTPSP TLDLNSSAEV DSLQAPTQKL CVNPLSQRLM ETASNSSSLR SIYGSDEGAK 60
61 KKDNSQVTSS RSELRKNSIS GNSNPGSNSG STKPR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [300-416] |
1 11 21 31 41 51
| | | | | |
1 MKRKPRVLFS QAQVLELECR FRLKKYLTGA EREIIAQKLN LSATQVKIWF QNRRYKSKRG 60
61 DIDCEGIAKH LKLKSEPLDS PTSLPPPIPN HVMWPPTMQQ SQQQQQHHAQ QQQMQHM
|
| Detection Method: | |
| Confidence: | 22.522879 |
| Match: | 1pufA |
| Description: | Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| transcription repressor activity | 3.55154985983449 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
| transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.26183812259792 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.49423102874486 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.14886080629275 | bayes_pls_golite062009 |
| chromatin binding | 1.04132983826241 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.13444271681002 | bayes_pls_golite062009 |
