| Protein: | Cbp20-PA |
| Organism: | Drosophila melanogaster |
| Length: | 154 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cbp20-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
133.0 | [0..13] | [154..1] |
|
|
133.0 | [0..18] | [151..2] |
|
|
132.0 | [0..25] | [154..7] |
|
|
131.0 | [0..21] | [154..26] |
|
|
131.0 | [0..6] | [153..191] |
|
|
131.0 | [0..3] | [150..17] |
|
|
130.0 | [0..10] | [152..102] |
|
Region A: Residues: [1-154] |
1 11 21 31 41 51
| | | | | |
1 MFASVELSSY RDQHFKGSRS EQERSLRDSC TLYVGNLSFY TTEEQIHELF SRCGDVRVIV 60
61 MGLDKYKKTP CGFCFVEYYV RSEAEAAMRF VNGTRLDDRL IRVDWDAGFV EGRQYGRGKT 120
121 GGQVRDEYRT DYDAGRGGYG KLLSQKIAPN TDNR
|
| Detection Method: |  |
| Confidence: | 25.045757 |
| Match: | 1h2tZ |
| Description: | CBP20, 20KDa nuclear cap-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| RNA cap binding | 5.43390507836051 | bayes_pls_golite062009 |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| snRNA binding | 3.28448936696877 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.26303528058407 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| transporter activity | 0.628672636801176 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.505106991526286 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.182749906784328 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.096231856558874 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.059732432409948 | bayes_pls_golite062009 |
| snoRNA binding | 0.0568636182001701 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.0510390778764699 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.0484248928275733 | bayes_pls_golite062009 |
