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Protein Overview: PABP2_ARATH

General Information:
Name(s) found: PABP2_ARATH [Swiss-Prot]
Description(s) found:
Found 18 descriptions.
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  • Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 629 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to salt stress [IEP]
    translational initiation [ISS]
    Molecular Function: translation initiation factor activity [ISS]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG  60
   61 TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI PLYGKPIRVM YSHRDPSVRR 120
  121 SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA 180
  181 IEKLNGMLLN DKQVYVGPFL RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK 240
  241 ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL 300
  301 RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS 360
  361 GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR VRLQAQFSQV RPVAMQPSVG 420
  421 PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP 480
  481 QQQRPGGGRR PGGIQHSQQQ NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI 540
  541 GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL 600
  601 KAKVAEAMDV LRSVAAGGAT EQLASLNLS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..210] PSI-BLAST 53.0 Poly(A)-binding protein
    2 View Details [211..314] PSI-BLAST 4.69897 solution structure of RNA binding domain 3 in RNA binding motif protein 12
    3 View Details [315..394] PSI-BLAST 17.39794 No description for 2d9pA was found.
    4 View Details [395..475] deduced N/A No confident structure predictions are available.
    5 View Details [476..629] PSI-BLAST 32.045757 poly(A) binding protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.55

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle