| Protein: | CG5205-PA |
| Organism: | Drosophila melanogaster |
| Length: | 2183 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG5205-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
1570.0 | [0..3] | [2181..35] |
|
Region A: Residues: [1-100] |
1 11 21 31 41 51
| | | | | |
1 MWEPPRLSAS LRAKTELEAR SRRLNVLRQA RTTSAASTTT NSQNKEEQTI ARLLAQMPTE 60
61 KQPAAKVQLQ KLRNLVQECM GYEEQPQVVE HAALFLFWLL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [101-218] |
1 11 21 31 41 51
| | | | | |
1 LDQRVLLVAT TQRLHGMFGQ TFDRKKTQIH DCVQAIGDLL EDHERSALKR WRQTHHKVPG 60
61 VGPLWGAHIH VKCTPSEWMD ISLLTDLAPD ALLKNRTVNK FSMKHTTKAA PVASTSSE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [219-412] |
1 11 21 31 41 51
| | | | | |
1 AAKLSPELQT LLEISAKLDD EHLIIRVGDI LGSQRSSEVL QNELMEILGF DYFELVEKLL 60
61 MERDKIARQL DQFATRSRRV MEVKQKRMEA AASGGAAERR PTVASAVVVQ SAQEKQLSKM 120
121 QRREEKKLQR IMRSIKDEEA EDDPNCAVAV SVQQLRMQHQ RKLLEAAQRE PLLLSTKAAK 180
181 AEYKQSSYNQ PIHY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [413-481] |
1 11 21 31 41 51
| | | | | |
1 PYVFDSQLLA KQHAGFIGGS RITLPDNAQR IDNKQWEEVK IPASEPPPLS VGNKRVQIEE 60
61 LDDVGRLAF
|
| Detection Method: | |
| Confidence: | 71.30103 |
| Match: | 2j0qA |
| Description: | No description for 2j0qA was found. |
|
Region A: Residues: [482-725] |
1 11 21 31 41 51
| | | | | |
1 ANCKELNRIQ SVVFPVAYHS NENMLVCAPT GAGKTNVAML SIVHTIRCHL EQGVINRDEF 60
61 KIVYIAPMKA LAAEMVDNFS KRLKSLQIAV RELTGDIQLT KAEMAATQIL VTTPEKWDVV 120
121 TRKGSGDVAL ISLVELLIID EVHLLHGERG PVVEALVART LRLVESSQSM IRIVGLSATL 180
181 PNYIDVAHFL RVNPMKGLFY FDSRFRPVPL DTNFVGIKSV KQLQQIADMD QCCYQKCVEM 240
241 VQEG
|
| Detection Method: | |
| Confidence: | 6.522879 |
| Match: | 2v8oA |
| Description: | No description for 2v8oA was found. |
|
Region A: Residues: [726-1887] |
1 11 21 31 41 51
| | | | | |
1 HQIMVFVHAR NATVRTANVI RELAQQNNTS ALFLPKDSAA HGLATRSIQR SRNKQLVELF 60
61 SCGLAMHHAG MLRADRQMVE KYFVEGHISV LVCTATLAWG VNLPAHAVII RGTDIYDAKH 120
121 GSFVDLGILD VLQIFGRAGR PQFDKSGVGT IITSYDKLNH YLSLLTNQFP IESNFVNCLA 180
181 DNLNAEIGLG TITNVDEAIE WLSYTYLFVR MRINPHVYGI EYSELEKDPT LEARRRALIM 240
241 SAAMSLDKAR MMRFNQRTMD MNITDLGRTA SYFYIKYDTV ETFNELMKPF MTQAEILAMI 300
301 SQAQEFQQLK VRDDEMEELD ELKNAYCKIK PYGGSENVHG KVNILIQTYL SNGYVKSFSL 360
361 SSDMSYITTN IGRISRALFS IVLRQNNAVL SGNMLQLCKM FERRQWDFDC HLKQFPTINA 420
421 ETIDKLERRG LSVYRLRDME HRELKEWLRS NTYADLVIRS AHELPLLEVE ASLQPITRTV 480
481 LRIKVDIWPS FTWNDRVHGK TCQSFWLWIE DPESNYIYHS ELFQVTRKLV MSGQSQQLVM 540
541 TIPLKEPLPP QYYIRVSSDN WLGSTTCIPL SFQHLVLPEH HPPLTELLPL RPLPVSCLKN 600
601 VVYESLYKFT HFNPIQTQIF HCLYHTDNNV LLGAPTGSGK TIVAEIAIFR ALNQNPKCKV 660
661 VYIAPLKALV KERIADWEQR FQRSSLGLKV VELTGDVTPD IQAIRESQLI VTTPEKWDGI 720
721 SRSWQTREYV QHVSLIVIDE IHLLGEDRGP VIEVIVSRTN FISSHTGRAI RIVGLSTALA 780
781 NAQDLANWLG INKMGLYNFK PSVRPVPLQV HINGFPGKHY CPRMATMNRP TFQAIRTYSP 840
841 CEPTIVFVSS RRQTRLTALD LITFVAGESN PKQFLHIPED EIELILQNIR EQNLKFCLAF 900
901 GIGLHHAGLQ EQDRKCVEEL FLNRKIQILV ATATLAWGVN LPAHLVVIKG TEYFDGKVKK 960
961 YVDMPITDVL QMMGRAGRPQ FDNEGVAVVL VHDEKKNFYK KFLYDPFPVE SSLLGVLPEH1020
1021 INAEIVAGTV QSKQAALDYL TWTYFFRRLL RNPSYYQLQD IEPENVNNFM SNLVERVVYE1080
1081 LSAAACLVER DGCLIPTFLG RISSYYYLSY RTMKHFLEDL QPGMNTKKVL LAIADSYEFD1140
1141 QLPVRHNEDK HNEEMAEVSR FR
|
| Detection Method: | |
| Confidence: | 47.69897 |
| Match: | 2eyqA |
| Description: | Crystal structure of Escherichia coli transcription-repair coupling factor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 4.704140727858 | bayes_pls_golite062009 | |
| structural constituent of ribosome | 3.070470376968 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| RNA binding | 2.29590582680214 | bayes_pls_golite062009 |
| nucleic acid binding | 2.11222585187695 | bayes_pls_golite062009 |
| structural molecule activity | 2.08211451183607 | bayes_pls_golite062009 |
| DNA binding | 1.7904783386531 | bayes_pls_golite062009 |
| transcription regulator activity | 1.68903321260301 | bayes_pls_golite062009 |
| RNA helicase activity | 1.42791449104435 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 1.39335733374328 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 1.36724390116598 | bayes_pls_golite062009 |
| snRNA binding | 1.20045983086701 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| mRNA binding | 0.76699944561918 | bayes_pls_golite062009 |
| helicase activity | 0.6191010101321 | bayes_pls_golite062009 |
| transcription factor activity | 0.603758349693077 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.569910969126728 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.568840867400671 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.568779924702229 | bayes_pls_golite062009 |
| nucleotide binding | 0.564275755355315 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.29664013896754 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.29664013896754 | bayes_pls_golite062009 |
| translation regulator activity | 0.29096092258568 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.274994961137851 | bayes_pls_golite062009 |
| ATP binding | 0.1860481660648 | bayes_pls_golite062009 |
| protein binding | 0.170837278876362 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.152859582615242 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.138615225841109 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.0530667986761242 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.0482442222493492 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.028470639373934 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.0265151533232588 | bayes_pls_golite062009 |
|
Region A: Residues: [1888-2017] |
1 11 21 31 41 51
| | | | | |
1 PPSSSWDSSY TKTFLLLQAH FARQSLPNSD YLTDTKSALD NATRVMQAMV DYTAERGWLS 60
61 TTLVVQQLMQ SVIQARWFDG SEFLTLPGVN EDNLDAFLNI PHDDYDYLTL PVLKELCKQE 120
121 YEVLAKPLRD
|
| Detection Method: | |
| Confidence: | 84.0 |
| Match: | 2p6rA |
| Description: | No description for 2p6rA was found. |
|
Region A: Residues: [2018-2183] |
1 11 21 31 41 51
| | | | | |
1 AFEEHEIEKM YKVIQDLPEI AIQIFVEGRH MENEYAKRPL SLSDDTRGEW MSLHANEDYV 60
61 LIVNLQRLNV SGQRRGGGQS YTVHCPKYPK PKNEAWFLTL GSQANDELLA MKRVSIRGQR 120
121 CTNRISFQAT PRLGRLQLTL YLMSDCLMGF DQQYDLQFEI IDAKEV
|
| Detection Method: | |
| Confidence: | 79.69897 |
| Match: | 2q0zX |
| Description: | No description for 2q0zX was found. |
| Term | Confidence | Notes |
| structural molecule activity | 2.80935217964088 | bayes_pls_golite062009 |
| binding | 2.65544526722793 | bayes_pls_golite062009 |
| protein binding | 1.50286160643298 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 0.423207248971435 | bayes_pls_golite062009 |
| ligand-gated channel activity | 0.423207248971435 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.42238661903557 | bayes_pls_golite062009 |
