| Protein: | Karybeta3-PA, FB... |
| Organism: | Drosophila melanogaster |
| Length: | 1105 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Karybeta3-PA, FB....
| Description | E-value | Query Range |
Subject Range |
|
|
586.0 | [0..4] | [1099..25] |
|
Region A: Residues: [1-821] |
1 11 21 31 41 51
| | | | | |
1 MAADQAHFQQ LLASLLSTDN DVRQQAEEAY NNLSRELKVT HLLGNIQNGQ QSEEARQMAA 60
61 VLLRRLFTTE FFDFYKGLPA ESQNQLLQQI LLAVQQEVTP QLRRKICEVV AEVARNLIDE 120
121 DCNNQWPDIL QFLFQCANSP TPQLQESALR IFSSVPSIFG NQEAQYIDLI KQMLAKSMDA 180
181 GSDPEVRVQA VRAVGAFILY HDKENETAIH KHFADMLPRM IHITGETIEA QDDQSLLKLL 240
241 IEMTENCPKF LRPQLEFIFE VCMKVFSSQD FEDSWRHLVL EVMVSLAENA PSMIRKRADK 300
301 YIVALIPLIL HMMTDLDDDE NWSTADVVDD DDHSDNNVIA ESSLDRLACG LGGKIVLPLV 360
361 MNALPVMLGH ADWKHRFAAL MAISAIGEGC HKQMEAILDE VMSGVLNFLS DPHPRVRYAA 420
421 CNAIGQMSTD FAQTFEKKFH SQVIPGLLSL LDDVENPRVQ AHAGAALVNF SEDCPKNILT 480
481 RYLDGIMAKL ETILNSKFKE LVEKGNKLVL EQVVTTIASV ADTCESEFVA YYDRLMPCLK 540
541 FIIQNANSDD LRMLRGKTIE CVSLIGLAVG REKFIGDAGE VMDMLLVNHT EGGELADDDP 600
601 QTSYLITAWA RMCKILGKQF EQYLPLVMGP VMRTATMKPE VAMLDNDEVE DIDGDVDWSF 660
661 INLGEQQNFA IRTAGMDDKA SACEMLVCYA RELKEGFAEY AEDVVRQMLP MLKFYFHDGV 720
721 RTAAAESLPY LLDCAKIKGP QYLEGMWMFI CPELLKVIVT EPEPDVQSEL LNSLAKCIET 780
781 LGPNCLNEDA MKQVLEIINK YVLEHFERAD KRLAARNEED Y
|
| Detection Method: |  |
| Confidence: | 77.69897 |
| Match: | 2ot8A |
| Description: | No description for 2ot8A was found. |
|
Region A: Residues: [822-1105] |
1 11 21 31 41 51
| | | | | |
1 DDGVEEELAE QDDTDVYILS KIVDITHALF QTNKAQFLPA FEQVAPHFVK LLEPSRPVAD 60
61 RQWGLCVFDD LIEFCGPACA PYQQIFTPAL VQYVCDKAPE VRQAAAYGCG VLGQFAGEQF 120
121 AHTCAQIIPL LVQVINDPKA REIENISPTE NAISAFAKIL KYNNSALSNV DELIGVWFSW 180
181 LPVSEDSEEA AHIYGYLCDL IEGNHPVILG ANNGNLPRIV SIIAESFCTK VVEAQSATGT 240
241 RMLTIVKQVE SNPEVMAACA STLSPEQQQA LQDAYRELAN VAPA
|
| Detection Method: | |
| Confidence: | 36.522879 |
| Match: | 1wa5B |
| Description: | Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein transporter activity | 4.58709163830613 | bayes_pls_golite062009 |
| binding | 3.0667965351474 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 2.74547353635661 | bayes_pls_golite062009 |
| transporter activity | 2.48700774379895 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.26725422172281 | bayes_pls_golite062009 |
| nuclear export signal receptor activity | 2.13470398426489 | bayes_pls_golite062009 |
| nuclear localization sequence binding | 1.91487015967262 | bayes_pls_golite062009 |
| protein binding | 1.73688475473996 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.28481004323799 | bayes_pls_golite062009 |
| RNA binding | 1.20550543134698 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 1.09652988954158 | bayes_pls_golite062009 |
| nucleic acid binding | 1.00841167631924 | bayes_pls_golite062009 |
| signal transducer activity | 0.662662274021266 | bayes_pls_golite062009 |
| molecular transducer activity | 0.662662274021266 | bayes_pls_golite062009 |
| signal sequence binding | 0.57106697498903 | bayes_pls_golite062009 |
| structural molecule activity | 0.449804281824548 | bayes_pls_golite062009 |
| transcription regulator activity | 0.385452858197632 | bayes_pls_golite062009 |
| mRNA binding | 0.37278269424461 | bayes_pls_golite062009 |
| DNA binding | 0.309260217284589 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.252495966234234 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.248585912061178 | bayes_pls_golite062009 |
| primary active transmembrane transporter activity | 0.226380819487924 | bayes_pls_golite062009 |
| P-P-bond-hydrolysis-driven transmembrane transporter activity | 0.217517113570989 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 0.178770060806735 | bayes_pls_golite062009 |
| ATPase activity, coupled to movement of substances | 0.175241020572885 | bayes_pls_golite062009 |
| ATPase activity, coupled to transmembrane movement of substances | 0.174922130116569 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.100181463251306 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.0635404099346928 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.0548082069333885 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.052195223119721 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.0405268469927988 | bayes_pls_golite062009 |
