| Protein: | retn-PA |
| Organism: | Drosophila melanogaster |
| Length: | 906 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for retn-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
249.0 | [0..1] | [906..1] |
|
Region A: Residues: [1-161] |
1 11 21 31 41 51
| | | | | |
1 MQLRVHPTMD CSGRSTSNIE RDSDLGDDLS HGDRTDDEMR DCDSVDGEHH QLSAKAAIAA 60
61 RLSHTVSGGG GSFASPEPQT ELPLSHHHQL PPNHPLNALG SFMGIGGLHS IPNLQHSDVL 120
121 EKLKMQVRDM KVGLMEQDYA AAAHAAAFGA NMLPTTISSG F
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [162-281] |
1 11 21 31 41 51
| | | | | |
1 PLPHNSVAFG HVTSSPSGGN GSSYNGGTTP TNSSNSNATT NGGGTAGPGG TGGSGGGGGG 60
61 GGGGGGGVGG HQFSFASPTA APSGKEANSA SNSSTSSEAS NSSQQNNGWS FEEQFKQVRQ 120
121
|
| Detection Method: | |
| Confidence: | 6.0 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [282-405] |
1 11 21 31 41 51
| | | | | |
1 LYEINDDPKR KEFLDDLFSF MQKRGTPINR LPIMAKSVLD LYELYNLVIA RGGLVDVINK 60
61 KLWQEIIKGL HLPSSITSAA FTLRTQYMKY LYPYECEKKN LSTPAELQAA IDGNRREGRR 120
121 SSYG
|
| Detection Method: | |
| Confidence: | 18.0 |
| Match: | 1kqqA |
| Description: | DNA-binding domain from the dead ringer protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.55411292098115 | bayes_pls_golite062009 |
| DNA binding | 4.42692928312159 | bayes_pls_golite062009 |
| nucleic acid binding | 4.31553768044343 | bayes_pls_golite062009 |
| transcription activator activity | 3.52298398128865 | bayes_pls_golite062009 |
| binding | 2.97217702905299 | bayes_pls_golite062009 |
| transcription repressor activity | 2.80681923216447 | bayes_pls_golite062009 |
| transcription factor activity | 2.58593134374376 | bayes_pls_golite062009 |
| protein binding | 1.76687312643483 | bayes_pls_golite062009 |
| transcription factor binding | 1.28734696305262 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.13378621684772 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.06026105710513 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.04454363470311 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.46237393414621 | bayes_pls_golite062009 |
|
Region A: Residues: [406-624] |
1 11 21 31 41 51
| | | | | |
1 QYEAMHNQMP MTPISRPSLP GGMQQMSPLA LVTHAAVANN QQAQAAAAAA AAHHRLMGAP 60
61 AFGQMPNLVK QEIESRMMEY LQLIQAKKEQ GMPPVLGGNH PHQQQHSQQQ QQQQHHHQQQ 120
121 QQQQSQQQHH LQQQRQRSQS PDLSKHEALS AQVALWHMYH NNNSPPGSAH TSPQQREALN 180
181 LSDSPPNLTN IKREREREPT PEPVDQDDKF VDQPPPAKR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [625-735] |
1 11 21 31 41 51
| | | | | |
1 VGSGLLPPGF PANFYLNPHN MAAVAAAAGF HHPSMGHQQD AASEGEPEDD YAHGEHNTTG 60
61 NSSSMHDDSE PQQMNGHHHH QTHHLDKSDD SAIENSPTTS TTTGGSVGHR H
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [736-906] |
1 11 21 31 41 51
| | | | | |
1 SSPVSTKKKG GAKPQSGGKD VPTEDKDASS SGKLNPLETL SLLSGMQFQV ARNGTGDNGE 60
61 PQLIVNLELN GVKYSGVLVA NVPLSQSETR TSSPCHAEAP TVEEEKDEEE EEEPKAAEEE 120
121 SHRSPVKQEN EDVDQDMEGS EVLLNGGASA VGGAGAGVGV GVPLLKDAVV S
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
