| Protein: | Sema-1b-PC, Sema... |
| Organism: | Drosophila melanogaster |
| Length: | 770 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Sema-1b-PC, Sema....
| Description | E-value | Query Range |
Subject Range |
|
|
691.0 | [0..1] | [770..1] |
|
Region A: Residues: [1-673] |
1 11 21 31 41 51
| | | | | |
1 MSSKSRPSSA AMLVNAIPMI LLITLSGLTI VAGWMPDVKP DLQTKQDKVL AHFIGNSTDY 60
61 FKILDHNDEF VLVGAKDVIY NVSLNGLKEI ARLEWHSTDA DRELCALKGK HEWDCHNYLR 120
121 VYALRPNGEV LLCGTNSYKP RCRHYTPVEV SSEEAGSAGH AHAMRYEVSR DVEAQGLCPY 180
181 SPAHNSTYAF ADGHLYSATV ADFSGGDPLI YRENLRTEQY DLKQLNQPDF VGAIERNGYV 240
241 LFFFRELSME VMNFGKAVYS RVARVCKNDR GGPYSHGKSW TSFLKARLNC SVPGEFPFYF 300
301 DEIQAISPIV ESGSKSLIYA VFTTSVNAIP GSAVCAFNVD DILAAFDGEF KSQKDSQSHW 360
361 LPVEREQVPK PRPGQCVEDS RTLTSIAVNF IKNHPLMEEA VPAVHGRPLL TKVNLHHRLT 420
421 AIAVHPQVKS LSGAYYDVIY SGTDDGKVTK FINILSTHPN STVDRLKTVV ISEMQVLPLG 480
481 TPIRELVIST SKNSLVVVSD GSLVSVPLHH CSHIVDCLGC LSLQDPICAW DLQTHECKNL 540
541 ATSQHKFGTK TYLQSLNSTK KAAALLCPHI PRDAPGAETV SFVTMAPPPT EEQKLLYSNV 600
601 GSSQGNQPSL EQQPTGGDDF GLNKITLTSM DPDDIMPNLN DPQKSTASVD EIKYASTPSF 660
661 MLLTTIVFFT FLV
|
| Detection Method: |  |
| Confidence: | 132.0 |
| Match: | 1olzA |
| Description: | The ligand-binding face of the semaphorins revealed by the high resolution crystal structure of SEMA4D |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| antigen binding | 3.72597633672466 | bayes_pls_golite062009 |
| receptor activity | 1.72641278961515 | bayes_pls_golite062009 |
| peptide antigen binding | 1.66960790017756 | bayes_pls_golite062009 |
| binding | 1.4212448680573 | bayes_pls_golite062009 |
| axon guidance receptor activity | 1.25652075776666 | bayes_pls_golite062009 |
| transmembrane receptor activity | 1.15635912144616 | bayes_pls_golite062009 |
| protein binding | 1.15274187225647 | bayes_pls_golite062009 |
| receptor binding | 0.85968680895393 | bayes_pls_golite062009 |
| signal transducer activity | 0.791510332487796 | bayes_pls_golite062009 |
| molecular transducer activity | 0.791510332487796 | bayes_pls_golite062009 |
| immunoglobulin binding | 0.48272957113121 | bayes_pls_golite062009 |
| transmembrane receptor protein tyrosine kinase activity | 0.31988469097193 | bayes_pls_golite062009 |
| MHC class II receptor activity | 0.251167772391909 | bayes_pls_golite062009 |
| fibroblast growth factor 1 binding | 0.15810089914274 | bayes_pls_golite062009 |
|
Region A: Residues: [674-770] |
1 11 21 31 41 51
| | | | | |
1 GGIAGICCVK AKSRLMEAQM DESHRNHFGK PMQFKHQNTG KDINLLMGSN AYTTTQKTPN 60
61 LDLEKDRSHE CKNSTEHLEK ELPCKTSTLT KVKRTYI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
