| Protein: | Psi-PB |
| Organism: | Drosophila melanogaster |
| Length: | 796 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Psi-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
293.0 | [0..1] | [796..1] |
|
Region A: Residues: [1-106] |
1 11 21 31 41 51
| | | | | |
1 MSDFQQQGIN QSQALAQAIQ RAKQIAAKIQ PSQQGGGTAG PSPPSSGGGP GFKRINDDGD 60
61 SGPESKRSLG SPEYANNSSN MSSGSGGGGG GGGGPGGASI TQAIAQ
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [107-291] |
1 11 21 31 41 51
| | | | | |
1 AAAVAARLAA SAGTSCEEQI RLPESVAGAF MGRSSNDTIT HIQAESGVKV QVMQDQDRVI 60
61 MLRGQRDTVT KGREMIQNMA NRAGGGQVEV LLTINMPPPG PSGYPPYQEI MIPGAKVGLV 120
121 IGKGGDTIKQ LQEKTGAKMI IIQDGPNQEL IKPLRISGEA QKIEHAKQMV LDLIAQKDAQ 180
181 GQQQG
|
| Detection Method: | |
| Confidence: | 28.69897 |
| Match: | 2annA |
| Description: | No description for 2annA was found. |
|
Region A: Residues: [292-512] |
1 11 21 31 41 51
| | | | | |
1 GRGGGGGGGG PGMGFNNFNN GNGGESTEVF VPKIAVGVVI GKGGDMIRKI QTECGCKLQF 60
61 IQGKNDEMGD RRCVIQGTRQ QVDDAKRTID GLIENVMQRN GMNRNGNGGG GGPGGDSGNS 120
121 NYGYGYGVNH AQGGREEITF LVPASKCGIV IGRGGETIKL INQQSGAHTE MDRNASNPPN 180
181 EKLFKSKGTT DQVEAARQMI SEKINMELNV ISRKPIGGGP G
|
| Detection Method: | |
| Confidence: | 18.154902 |
| Match: | 1j4wA |
| Description: | Far upstream binding element, FBP, KH3 and KH4 domains |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.76415077523249 | bayes_pls_golite062009 |
| mRNA binding | 5.07455187994216 | bayes_pls_golite062009 |
| 4.82131641133915 | bayes_pls_golite062009 | |
| nucleic acid binding | 4.78650555542715 | bayes_pls_golite062009 |
| binding | 3.45962790790935 | bayes_pls_golite062009 |
| transcription regulator activity | 2.28364833275102 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 2.05765562493656 | bayes_pls_golite062009 |
| DNA binding | 2.03207983673692 | bayes_pls_golite062009 |
| transcription repressor activity | 1.87340518658135 | bayes_pls_golite062009 |
| transcription factor activity | 1.30278154718684 | bayes_pls_golite062009 |
| protein binding | 1.16541072642796 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.981003625136521 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.489176583045793 | bayes_pls_golite062009 |
| transcription activator activity | 0.324382863054631 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.32222928997178 | bayes_pls_golite062009 |
| transcription factor binding | 0.254024117548226 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.1069917291606 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0321875054165348 | bayes_pls_golite062009 |
|
Region A: Residues: [513-691] |
1 11 21 31 41 51
| | | | | |
1 GGGGNSGGGQ NNSHHNQQQG GYGGQNQMQG GDPNSGAGYQ QQPWGGPYGQ QGWDPSGQQQ 60
61 QMAMANQGGS AAGGASGGQD YSAQWIEYYK QMGCHREAEM IEQQMKAKQA GGSSGPVQQQ 120
121 QPQQQQQSQQ QTGGAGAGGA DYSAQWAEYY RSVGKIEEAE AIEKTLKNKQ NGSGGQSST
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [692-796] |
1 11 21 31 41 51
| | | | | |
1 PNPSQGGSGQ QQPNPAAAAA AAAAAAAAAG GYGQSMTPTQ YAQYSQYYAA AAAAGGQPQG 60
61 APQPGGGQSG GPPGNYPGNY PGAGYGGYPG APGQQQQKSH KNDNH
|
| Detection Method: | |
| Confidence: | 6.39794 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
