| Protein: | CG12129-PA |
| Organism: | Drosophila melanogaster |
| Length: | 352 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG12129-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
187.0 | [0..1] | [352..1] |
|
Region A: Residues: [1-226] |
1 11 21 31 41 51
| | | | | |
1 MSREVLSPPV QKMSQNRRYR VNVVHDDFGG DKWNGQNQRN KLEYKAYEEP DLYGDDDDDE 60
61 DDAVVKCIKE SANGDFSLSI HVSKSFYGGL IGMKGSTKRR IEEETRTEIF VPRPNDRSNE 120
121 VTIKAKQRSQ VCAALRQIHH LVASLRKKMK PTHFLAVALN SGEVKERFME LKKCILEAEL 180
181 PGIDKELFTP ECCIHLTLGV YVLLDDIERQ EALKNLESCR RLLDGL
|
| Detection Method: |  |
| Confidence: | 19.522879 |
| Match: | 1e3hA |
| Description: | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.34763707358864 | bayes_pls_golite062009 |
| nucleic acid binding | 2.24838127771592 | bayes_pls_golite062009 |
| DNA binding | 2.02012288821639 | bayes_pls_golite062009 |
| binding | 1.9759530321894 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.81524862921454 | bayes_pls_golite062009 |
| single-stranded DNA binding | 1.62996999055328 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.62566906146573 | bayes_pls_golite062009 |
| transcription termination factor activity | 1.37964248399809 | bayes_pls_golite062009 |
| structural molecule activity | 1.30244482268813 | bayes_pls_golite062009 |
| RNA polymerase activity | 1.19766815287926 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 1.19766815287926 | bayes_pls_golite062009 |
| transcription factor activity | 1.14242112812892 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.85691075793641 | bayes_pls_golite062009 |
| ribonuclease activity | 0.62994126331969 | bayes_pls_golite062009 |
| protein binding | 0.523813050066193 | bayes_pls_golite062009 |
| translation regulator activity | 0.515576958825022 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.468402630523277 | bayes_pls_golite062009 |
| RNA binding | 0.24714225183821 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.2080607201312 | bayes_pls_golite062009 |
| catalytic activity | 0.10089766806364 | bayes_pls_golite062009 |
| transcription factor binding | 0.0761113004281331 | bayes_pls_golite062009 |
|
Region A: Residues: [227-352] |
1 11 21 31 41 51
| | | | | |
1 KIPFQIKVKG LEIMNDDPSS TRILYARIES PDLQKFADQC LAHFQTTALC ATDNIERESI 60
61 KLHMTVMNNR YRNKANKSGN SFDAREILKR FGDFDFGVAQ CQAVHLCVLN SRSEDEFYKI 120
121 SGSLEF
|
| Detection Method: | |
| Confidence: | 21.154902 |
| Match: | 1vdxA |
| Description: | Crystal Structure of a Pyrococcus horikoshii protein with similarities to 2'5' RNA-ligase |
Matching Structure (courtesy of the PDB): |
|
