| Protein: | gi|124000543 |
| Organism: | synthetic construct |
| Length: | 464 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124000543.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-68 | [1..223] | [1..222] |
|
|
3.0E-67 | [1..240] | [1..240] |
|
|
3.0E-67 | [1..216] | [1..217] |
|
|
1.0E-66 | [1..225] | [1..225] |
|
|
5.0E-66 | [1..239] | [1..238] |
|
|
3.0E-64 | [1..240] | [1..240] |
|
|
5.0E-64 | [1..216] | [1..216] |
|
|
1.0E-63 | [1..231] | [1..236] |
|
|
2.0E-62 | [1..228] | [1..238] |
|
Region A: Residues: [1-183] |
1 11 21 31 41 51
| | | | | |
1 MDFQHRPGGK TGSGGVASSS ESNRDRRERL RQLALETIDI NKDPYFMKNH LGSYECKLCL 60
61 TLHNNEGSYL AHTQGKKHQT NLARRAAKEA KEAPAQPAPE KVKVEVKKFV KIGRPGYKVT 120
121 KQRDSEMGQQ SLLFQIDYPE IAEGIMPRHR FMSAYEQRIE PPDRRWQYLL MAAEPYETIA 180
181 FKV
|
| Detection Method: |  |
| Confidence: | 1.09 |
| Match: | 1zr9A |
| Description: | Solution Structure of a Human C2H2-type Zinc Finger Protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.37529385176635 | bayes_pls_golite062009 |
| DNA binding | 3.3049326844117 | bayes_pls_golite062009 |
| nucleic acid binding | 3.24981360535232 | bayes_pls_golite062009 |
| snRNA binding | 3.16782731106334 | bayes_pls_golite062009 |
| RNA binding | 3.11293528368816 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.86343975521155 | bayes_pls_golite062009 |
| binding | 2.84954567129719 | bayes_pls_golite062009 |
| transcription factor activity | 2.44389510173662 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.57041104288348 | bayes_pls_golite062009 |
| mRNA binding | 1.28525296322454 | bayes_pls_golite062009 |
| transcription activator activity | 1.20323819132961 | bayes_pls_golite062009 |
| protein binding | 0.975412203442928 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.732558534458316 | bayes_pls_golite062009 |
| transcription repressor activity | 0.686318575498149 | bayes_pls_golite062009 |
| chromatin binding | 0.626365497850853 | bayes_pls_golite062009 |
| transcription factor binding | 0.515821187939278 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.200483461579207 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.113925660147477 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.0855506955761403 | bayes_pls_golite062009 |
|
Region A: Residues: [184-341] |
1 11 21 31 41 51
| | | | | |
1 PSREIDKAEG KFWTHWNRET KQFFLQFHFK MEKPPAPPSL PAGPPGVKRP PPPLMNGLPP 60
61 RPPLPESLPP PPPGGLPLPP MPPTGPAPSG PPGPPQLPPP APGVHPPAPV VHPPASGVHP 120
121 PAPGVHPPAP GVHPPAPGVH PPTSGVHPPA PGVHPPAP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [342-464] |
1 11 21 31 41 51
| | | | | |
1 GVHPPAPGVH PPAPGVHPPA PGVHPPPSAG VHPQAPGVHP AAPAVHPQAP GVHPPAPGMH 60
61 PQAPGVHPQP PGVHPSAPGV HPQPPGVHPS NPGVHPPTPM PPMLRPPLPS EGPGNIPPPP 120
121 PTN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
