| Protein: | gi|123998707, gi... |
| Organism: | synthetic construct |
| Length: | 634 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123998707, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..634] | [1..634] |
|
|
0.0 | [1..634] | [1..634] |
|
|
0.0 | [1..634] | [1..634] |
|
|
0.0 | [1..634] | [1..634] |
|
|
0.0 | [1..634] | [1..634] |
|
|
0.0 | [1..634] | [1..640] |
|
|
0.0 | [1..634] | [302..942] |
|
|
0.0 | [4..634] | [328..960] |
|
Region A: Residues: [1-332] |
1 11 21 31 41 51
| | | | | |
1 MSLVPATNYI YTPLNQLKGG TIVNVYGVVK FFKPPYLSKG TDYCSVVTIV DQTNVKLTCL 60
61 LFSGNYEALP IIYKNGDIVR FHRLKIQVYK KETQGITSSG FASLTFEGTL GAPIIPRTSS 120
121 KYFNFTTEDH KMVEALRVWA STHMSPSWTL LKLCDVQPMQ YFDLTCQLLG KAEVDGASFL 180
181 LKVWDGTRTP FPSWRVLIQD LVLEGDLSHI HRLQNLTIDI LVYDNHVHVA RSLKVGSFLR 240
241 IYSLHTKLQS MNSENQTMLS LEFHLHGGTS YGRGIRVLPE SNSDVDQLKK DLESANLTAN 300
301 QHSDVICQSE PDDSFPSSGS VSLYEVERCQ QL
|
| Detection Method: |  |
| Confidence: | 124.0 |
| Match: | 1xjvA |
| Description: | Crystal structure of human POT1 bound to telomeric single-stranded DNA (TTAGGGTTAG) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| telomerase inhibitor activity | 8.08322438894165 | bayes_pls_golite062009 |
| single-stranded telomeric DNA binding | 7.13197590913268 | bayes_pls_golite062009 |
| telomeric DNA binding | 7.07761964836826 | bayes_pls_golite062009 |
| DEAD/H-box RNA helicase binding | 4.55461999169159 | bayes_pls_golite062009 |
| nucleic acid binding | 3.99127970564994 | bayes_pls_golite062009 |
| DNA binding | 3.53568546959418 | bayes_pls_golite062009 |
| structure-specific DNA binding | 3.53214384646348 | bayes_pls_golite062009 |
| single-stranded DNA binding | 3.49337353583487 | bayes_pls_golite062009 |
| binding | 2.83465364476231 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.13063800565247 | bayes_pls_golite062009 |
| structural molecule activity | 1.9177190829469 | bayes_pls_golite062009 |
| transcription regulator activity | 1.84350127337404 | bayes_pls_golite062009 |
| protein binding | 1.20309946451799 | bayes_pls_golite062009 |
| DNA helicase activity | 1.12203697857261 | bayes_pls_golite062009 |
| transcription repressor activity | 1.11836126147719 | bayes_pls_golite062009 |
| transcription activator activity | 1.09079153283893 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.961606389385315 | bayes_pls_golite062009 |
| transcription factor activity | 0.952569279670437 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.85691075793641 | bayes_pls_golite062009 |
| RNA polymerase activity | 0.79554655100991 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 0.79554655100991 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.638831894247026 | bayes_pls_golite062009 |
| ribonuclease activity | 0.62994126331969 | bayes_pls_golite062009 |
| nuclease activity | 0.57381531077345 | bayes_pls_golite062009 |
| translation regulator activity | 0.515576958825022 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.468402630523277 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.378383789953688 | bayes_pls_golite062009 |
| exonuclease activity | 0.28313884527829 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.2080607201312 | bayes_pls_golite062009 |
| four-way junction helicase activity | 0.13147110156029 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.0179535526984695 | bayes_pls_golite062009 |
| helicase activity | 0.0121541775159524 | bayes_pls_golite062009 |
|
Region A: Residues: [333-504] |
1 11 21 31 41 51
| | | | | |
1 SATILTDHQY LERTPLCAIL KQKAPQQYRI RAKLRSYKPR RLFQSVKLHC PKCHLLQEVP 60
61 HEGDLDIIFQ DGATKTPDVK LQNTSLYDSK IWTTKNQKGR KVAVHFVKNN GILPLSNECL 120
121 LLIEGGTLSE ICKLSNKFNS VIPVRSGHED LELLDLSAPF LIQGTIHHYG CK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [505-634] |
1 11 21 31 41 51
| | | | | |
1 QCSSLRSIQN LNSLVDKTSW IPSSVAEALG IVPLQYVFVM TFTLDDGTGV LEAYLMDSDK 60
61 FFQIPASEVL MDDDLQKSVD MIMDMFCPPG IKIDAYPWLE CFIKSYNVTN GTDNQICYQI 120
121 FDTTVAEDVI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
